| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 496,096 | T→A | 10.8% | intergenic (‑63/‑33) | PP_0408 ← / → PP_0409 | hypothetical protein/two‑component system sensor histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 496,096 | 0 | T | A | 10.8% | 174.3 / 11.5 | 74 | intergenic (‑63/‑33) | PP_0408/PP_0409 | hypothetical protein/two‑component system sensor histidine kinase |
| Reads supporting (aligned to +/- strand): ref base T (33/32); new base A (5/3); total (38/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.33e-01 | |||||||||||
TCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTGGC > NC_002947/495951‑496243 | tCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCCGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCa > 5:205607/1‑149 (MQ=255) cGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAAGCCAGGAAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACAAGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTATTAGTATTTGCACGTGA‑AGGCCATGCTGCAt > 2:94849/1‑149 (MQ=255) ggCATCGGCGGTCAGGGCGCCGAGTGGAAGGAGCGAGGCCAGGCATCACATTGCCAGCGTCGTGCGATAAAGTGCGGACATGAGTCAACCCAATGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCGATGCTGCATg < 4:195450/149‑1 (MQ=255) ggCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATg > 5:233166/1‑149 (MQ=255) actCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGACCGTGA‑CGGCCATGCTGCATGGc > 4:63937/3‑149 (MQ=255) ggcggcCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGCACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCAGCATGGCCGt < 2:365353/148‑1 (MQ=255) ggcCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCttt < 2:349450/149‑1 (MQ=255) ccAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCAGCATGGCCGTca < 6:240202/145‑2 (MQ=255) ccAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCAGCATGGCCGTca > 5:240202/1‑144 (MQ=255) ccAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCAGTGA‑CGGCCATGCTGCATGGCCGTCTTTg > 7:120555/1‑148 (MQ=255) gggCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCaa < 4:187900/149‑1 (MQ=255) gctaGTGGAAGGACCGAGGCAAGGCAGCACATTGCCAGCGTCGTTCGATTAAGTGTGGACATGATTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATATTATTTGCCCGTGA‑CGGCCATGCGGCATGGCCGTCTTTGCCAATTCGa < 8:120555/146‑1 (MQ=255) cGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CCGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAg > 2:14036/1‑149 (MQ=255) gAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGc < 8:27606/149‑1 (MQ=255) gAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACCGGCCATGCTGCATGGCCGTCTTTGCCAAGt < 1:40733/140‑1 (MQ=255) gAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGt > 2:40733/1‑139 (MQ=255) gAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGtata < 3:309680/149‑1 (MQ=255) gAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGtata > 7:154033/1‑149 (MQ=255) aaGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGta > 4:38628/1‑146 (MQ=255) aGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGc > 4:327940/1‑142 (MQ=255) aGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGc < 3:327940/142‑1 (MQ=255) gACCTAAGCCAGGCAGCACATTGCCAGCGTCGTGCGATATAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATg < 1:94849/149‑1 (MQ=255) ccGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGaa < 5:50704/149‑1 (MQ=255) ccAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGt < 3:161035/149‑1 (MQ=255) cAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTg > 4:304670/1‑149 (MQ=255) cagcaCATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTc < 3:63937/149‑1 (MQ=255) acaTTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCt > 4:164876/1‑149 (MQ=255) ttGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGtt > 1:54776/1‑149 (MQ=255) gCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTg‑g > 6:51225/1‑149 (MQ=255) cAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑Gtt > 7:92177/1‑149 (MQ=255) gtcgtGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCg > 5:400511/1‑149 (MQ=255) gtGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGgct > 2:137785/1‑149 (MQ=255) tGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGgctg < 3:304670/149‑1 (MQ=255) aTAAAGTGTGGACATGAGGCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTtg < 4:238419/149‑1 (MQ=255) tgGACATGAGTCAACCCAAGGCCAGAATGAATCCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGcc > 1:171716/1‑149 (MQ=255) gACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCt < 8:154033/149‑1 (MQ=255) gTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGaa < 2:174747/98‑1 (MQ=255) gTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGaa > 1:174747/1‑98 (MQ=255) tCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGcc > 6:100723/1‑149 (MQ=255) cccAAGGCCAGATTGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCGTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTggg < 6:27539/149‑1 (MQ=255) ccAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGc < 6:205607/149‑1 (MQ=255) aaTGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCAGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGAGTCGACTGGTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAg > 5:253338/1‑149 (MQ=255) aaTGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCAAGCTGCATCGACGTCTTAGCCAAGTCGAGCGTATAGATGAACCGAGTGCGTCGCCTGTTG‑GATATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAg > 2:76143/1‑149 (MQ=255) aTGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAgg < 3:38628/149‑1 (MQ=255) aaaCCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGgcgc > 3:276850/1‑149 (MQ=255) aaaCCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGgcg < 3:346441/148‑1 (MQ=255) aaCCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGgcgc < 5:51225/148‑1 (MQ=255) aaCCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCt > 8:304334/1‑149 (MQ=255) cGGCAGCCTAATAGTATTTGCCCGTGA‑CCGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGcc < 1:14036/149‑1 (MQ=255) gCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTCTCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCct < 1:383717/149‑1 (MQ=255) gCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCct > 2:101627/1‑149 (MQ=255) aGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCctct < 4:103468/149‑1 (MQ=255) gCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCtg < 8:92177/149‑1 (MQ=255) ccTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTTTGGCGGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCtgt < 7:282115/149‑1 (MQ=255) ccTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCtgt > 1:162527/1‑149 (MQ=255) cTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCtgtg < 1:137785/149‑1 (MQ=255) tAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTg > 5:130314/1‑139 (MQ=255) tAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTg < 6:130314/139‑1 (MQ=255) aaTAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAgg > 8:12400/1‑133 (MQ=255) aaTAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAgg < 7:12400/133‑1 (MQ=255) gTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTg > 5:115949/1‑149 (MQ=255) tttGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGa < 3:164876/148‑1 (MQ=255) ggcaaagA‑CGGCCATGCAGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGACTATTA‑ATTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCt > 2:21393/7‑149 (MQ=255) gCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCt > 2:209738/1‑149 (MQ=255) cccGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCt < 6:115949/148‑1 (MQ=255) gTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTg > 6:78734/1‑105 (MQ=255) gTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTg < 5:78734/105‑1 (MQ=255) gTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCACGCCCGAGGCGCTGCCCTCTGTGGTGCGGGAGCCTgcc > 2:31374/1‑146 (MQ=255) aagA‑CGGCCATGCAGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGAc > 1:225741/3‑148 (MQ=255) agA‑CGGCCATGCAGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCt > 2:361918/2‑137 (MQ=255) a‑CGGCCATGCAGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACcag > 1:312892/1‑148 (MQ=255) cGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACcagca < 7:304334/149‑1 (MQ=255) cATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACcagcagcag > 3:363446/1‑149 (MQ=255) aTGCAGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGt < 2:312892/149‑1 (MQ=255) gctgcATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAgg > 4:214985/1‑108 (MQ=255) gctgcATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAgg < 3:214985/108‑1 (MQ=255) gctgcATGGACTTCTTAGACAAGTAGAGCGAATAGATGAAGCGAGTGCGTCGACTGTTG‑GTTATCGGCAGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTgg > 2:93756/1‑149 (MQ=255) ctgcATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTGGc < 1:209738/149‑1 (MQ=255) tgcATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGTATTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGATGCCCTCTGTGGTGATGGAGCCTGACCAGCAGCAGTGGc > 1:304642/1‑149 (MQ=255) | TCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGA‑CGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTG‑GTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTGGC > NC_002947/495951‑496243 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |