Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 603,658 | T→A | 9.8% | intergenic (+54/‑38) | ribAB‑I → / → ribH | bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 603,658 | 0 | T | A | 9.8% | 97.4 / 3.8 | 41 | intergenic (+54/‑38) | ribAB‑I/ribH | bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase |
Reads supporting (aligned to +/- strand): ref base T (11/25); new base A (2/2); total (14/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.84e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.41e-01 |
GTGTGCGCAAGATGCGCCTGATGAGTTCGCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCG > NC_002947/603510‑603804 | gtgtGCGCAAGATGCGCCTGATGAGTTCGCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCAAGTCCAGACCCCTGTCGAGGCCGCt > 7:147015/1‑149 (MQ=255) tgCGCAAGATGCGCCTGATGAGTTCGCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGt < 7:142692/149‑1 (MQ=255) cgcAAGATGCGCCTGATGAGTTCGCCGATGA‑AGGTTCAACGCGATATCCGGATTCGATCTGGAAGTTTTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCACTGCTCGAGTCCAGACCCCTGTCGAGGCCCCTTTTa > 1:46766/1‑149 (MQ=255) aaGATGCGCCTGATGAGTTCGCCGATGATA‑GTTAAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCGTTGACGCCATATGCTCGAGTCCAGCCCCATGTCGAGGCCGCtt > 1:222969/1‑143 (MQ=255) aaGATGCGCCTGATGAGTTCGCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCGTTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCtt < 2:222969/142‑1 (MQ=255) cgcCTGATGAGTTCGCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCg > 6:89570/1‑149 (MQ=255) cgcCTGATGAGTTCGCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCATACAAGCGGCCTc < 4:35480/148‑1 (MQ=255) cgcCTGATGAGTTCGCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCATACAAGCGGCCTc < 6:258772/148‑1 (MQ=255) aGTTCGCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGaa < 2:46766/148‑1 (MQ=255) aGTTCGCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCAAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGaa < 8:147015/148‑1 (MQ=255) gCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGAt > 8:20027/1‑146 (MQ=255) gCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATga < 2:286593/148‑1 (MQ=255) gCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATga < 1:144731/148‑1 (MQ=255) a‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCgg < 7:189928/149‑1 (MQ=255) a‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCgg < 1:291824/149‑1 (MQ=255) cAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAAt < 3:307658/148‑1 (MQ=255) aaCGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATg < 6:379752/148‑1 (MQ=255) tCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATgag > 2:283284/1‑127 (MQ=255) tCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATgag < 1:283284/127‑1 (MQ=255) tCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGa < 4:332951/149‑1 (MQ=255) ggATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGAcc > 8:364975/1‑148 (MQ=255) aTTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATc < 6:273442/149‑1 (MQ=255) gATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGGCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGaa < 2:243246/148‑1 (MQ=255) ggAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTAcc > 3:80439/1‑149 (MQ=255) gAAGTTGTAGAATACGTGCCCTCCTAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGTGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTAcc < 3:6246/148‑1 (MQ=255) gAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAg < 2:309076/143‑1 (MQ=255) gAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGCGTCCAGCCCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCGCTTGAAGATGAGAATATAGGAATGGCACTGCAGCCCCTCGAACGTACCGTCCTCcccc > 5:306044/1‑149 (MQ=255) tACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGCTGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCa < 6:285123/149‑1 (MQ=255) ccTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATTCGGCCACGCTCATGAAGATTAGAATATAGGAATGACCCTGCACACCATAGAAGGTACCATCATCGCCCCCAAAGGTCg > 3:330787/1‑149 (MQ=255) aCTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtg < 7:20027/149‑1 (MQ=255) ttGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCGTGTTTGCGGGCTGGCTATTGAAGATGAGAATATCGGAATGAACCGGAAGACCATCGAAGGTTCCATAATCGCCCCCAAAGGTCGCGATGCTTtggt > 2:57958/1‑149 (MQ=255) cGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCaa < 4:80439/149‑1 (MQ=255) gAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGtt < 7:364975/147‑1 (MQ=255) cccTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCtt < 5:266814/108‑1 (MQ=255) cccTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTg < 5:5400/149‑1 (MQ=255) cccTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATAGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTg > 3:108517/1‑149 (MQ=255) ccTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTgg < 8:253172/149‑1 (MQ=255) gagcGAGGCCGCATACAAGCGGCCTCGCTCTTGAAGATGAGAAAATCGGAATGACCCTGAAGACCATCGAAGGTACATTCATCGCACCCAAAGGTCGCTATGCTTTGGTCGTTCGCCGCTTCAACAGCTTCGTTGTCGAAAGCCAGGt > 2:283505/4‑148 (MQ=255) tCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAg < 5:89570/149‑1 (MQ=255) gcGAGGCCGCATACAAGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGACGCTTCAACAGCTACGTTGTCGAAAGCCTGGTAAg > 7:215672/2‑149 (MQ=255) gAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCACTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCg < 1:57958/149‑1 (MQ=255) cGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGcc < 4:108517/149‑1 (MQ=255) cGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGcc > 5:240200/1‑149 (MQ=255) gCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCg > 4:239143/1‑149 (MQ=255) ttGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTc < 6:272921/84‑1 (MQ=255) | GTGTGCGCAAGATGCGCCTGATGAGTTCGCCGATGA‑A‑GTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCG > NC_002947/603510‑603804 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |