| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 788,583 | A→T | 5.3% | intergenic (+33/‑180) | ettA → / → gdhA | ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 788,583 | 0 | A | T | 5.3% | 288.7 / 4.5 | 94 | intergenic (+33/‑180) | ettA/gdhA | ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (51/38); new base T (2/3); total (53/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.41e-01 | |||||||||||
GAACGTGGTGTTCTTCGAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTGGTACATTCCT > NC_002947/788436‑788729 | gAACGTGGTGTTCTTCGAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCaa > 7:262532/1‑149 (MQ=255) gtgtTCTTCGAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGttgacc > 4:58344/1‑144 (MQ=255) ttcttcGAAGGTAACTACACCGAGTACGAAGCCTACCGCAAGAAGCGTGTGGGTGATGCTGCTGCCCAGCCGCACCGGGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCa < 3:54044/148‑1 (MQ=255) cttcGAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCAttt > 4:226469/1‑149 (MQ=255) ttcGAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCAtttt > 4:341487/1‑149 (MQ=255) ttcGAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGACCCCAtttt > 2:230502/1‑149 (MQ=255) cGAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCAttttt < 6:113748/148‑1 (MQ=255) gAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAACCTGGACCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGACCCAAGTGGCCCCATTTTtgt > 8:93515/1‑149 (MQ=255) gAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTtgt > 1:18604/1‑149 (MQ=255) gAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTtgt > 6:299160/1‑149 (MQ=255) gAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAAAATGGGGCCACTTGGGGCCCCATTCTtgt < 2:382467/149‑1 (MQ=39) gAACGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCCTCTGGGGGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑AGAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTtgt < 7:126893/149‑1 (MQ=255) aGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGACACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑c < 5:235384/149‑1 (MQ=255) aaCTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTgg > 4:193675/1‑149 (MQ=255) aCTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTgg < 5:92514/148‑1 (MQ=255) aCTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAAAATGGGGCCACTTGGGGCCCGATTCTTGTG‑catca < 7:335120/148‑5 (MQ=38) cTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCg > 7:102764/1‑149 (MQ=255) tACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCg > 6:259585/1‑148 (MQ=255) cGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGc > 8:321238/1‑149 (MQ=255) tACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCtata < 8:262532/149‑1 (MQ=255) cGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATaaa > 8:130393/1‑149 (MQ=255) cGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATaaa > 4:43200/1‑149 (MQ=255) gAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAAt < 3:351711/149‑1 (MQ=255) aGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATgg > 3:275305/1‑149 (MQ=255) cGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCTGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATggcga < 6:107985/149‑1 (MQ=255) cGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATggcga < 5:14698/149‑1 (MQ=255) ccGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATggcgaggc > 8:372599/1‑149 (MQ=255) cAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATggcgaggcg > 3:120560/1‑147 (MQ=255) tGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTg > 8:70795/1‑149 (MQ=255) ggTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTGCCCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGt < 1:273717/149‑1 (MQ=255) ggTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGta < 8:102764/149‑1 (MQ=255) ggTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGAAGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑GCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGta < 1:312946/149‑1 (MQ=255) aTGCTGCTGCCCAGCCGCACCGTGTACGGCGACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGtata > 1:235778/1‑148 (MQ=255) aTGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATaca < 8:279377/149‑1 (MQ=255) aTGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATaca < 7:372599/149‑1 (MQ=255) gctgctgcCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACt > 7:10914/1‑149 (MQ=255) gctgctgcCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACt > 8:271167/1‑149 (MQ=255) ctgctgcCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACtt < 4:120560/149‑1 (MQ=255) tgctgcCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACtt > 6:30492/1‑148 (MQ=255) gctgcCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTa > 8:101381/1‑148 (MQ=255) ctgcCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACa < 5:259585/149‑1 (MQ=255) ccAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATaa > 7:137390/1‑148 (MQ=255) caaGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACAGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATaa > 6:4271/3‑148 (MQ=255) cAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATaaaa > 5:54877/1‑149 (MQ=255) gCCGCACCGTGTACGGC‑ACAAGAACCTGGCCCAGTAACCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTA‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTGACATAAAACg > 6:124188/1‑149 (MQ=255) cACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCAcc < 8:10914/149‑1 (MQ=255) tACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGGTATAAATGGCGAGGCGAAGGGGTATTTTGTATACCGTTACATAAAACGCACCAaagaat > 6:294292/1‑149 (MQ=255) ggC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAAttt > 6:141378/1‑148 (MQ=255) ggC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAAttt > 2:28055/1‑148 (MQ=255) ggC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTc < 2:18604/149‑1 (MQ=255) acaAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCaa > 1:47686/1‑148 (MQ=255) aaGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCaaaa > 1:318356/1‑148 (MQ=255) aaGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAAAGCACCAAATAATTTCaaaa > 5:89691/1‑148 (MQ=255) aGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCaaaaa > 2:120776/1‑148 (MQ=255) tGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACa > 7:335821/1‑149 (MQ=255) gCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACAtt < 3:193675/149‑1 (MQ=255) ccAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTc > 2:316569/1‑149 (MQ=255) aGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGc > 6:275001/1‑149 (MQ=255) aGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGc > 8:65111/1‑149 (MQ=255) gTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGcc < 3:336427/149‑1 (MQ=255) aGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTa > 3:384833/1‑149 (MQ=255) gCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATATTTGTG‑CCTGGCGGACCGATATAAATGGCGAGGCGAAGGTGTATTTTGTATACAATTACATAAAACGAACCAAATAATTTAAAAAAA‑ACGACATTTAGACCTAt > 2:352926/1‑149 (MQ=255) ccGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTAtt < 5:299160/149‑1 (MQ=255) gTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCACATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCg > 4:113586/1‑149 (MQ=255) gTTTTCTGATGCAAAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCg < 3:58344/149‑1 (MQ=255) ttCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGt < 3:226469/148‑1 (MQ=255) ttCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGt < 1:28055/148‑1 (MQ=255) tGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTa > 8:58408/1‑78 (MQ=255) tGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTa < 7:58408/78‑1 (MQ=255) ccaggCACAAAAATGGGGCCACTTGGGGCCCCATTCTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGa > 2:82316/5‑149 (MQ=38) tGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTg < 3:341487/149‑1 (MQ=255) tGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTg > 7:344605/1‑149 (MQ=255) tGCACAAGAATGGGGCCCCAAGTGACCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAATACGACATTTCGCCCTATTCCGGTGCGAtt < 1:230502/149‑1 (MQ=255) cacaAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGTCGAGGCGAAGGTGGTTTTTGTATTCACGTTCATAAAACGCACCAAATTATTTGAAAAAA‑ACGGCATTTGGGCCTATTGCGGTGCGGTTGcg > 1:304840/1‑148 (MQ=255) cacaAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGct > 4:17208/1‑149 (MQ=255) cacaAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGc < 7:23549/148‑1 (MQ=255) cacaAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGc > 8:23549/1‑148 (MQ=255) acaAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAATA‑ACGACATTTCGGCCTATTCCGGTGCGAGTGctt > 8:150355/1‑149 (MQ=255) acaAAAATGGGGCCACTTGGGGCCCCATTCTTGTG‑CCTGGCGGACCGCTATAAATGGGGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGctt > 1:108497/1‑149 (MQ=39) caAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGcttc < 5:30492/149‑1 (MQ=255) aaGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGcttct > 6:94278/1‑149 (MQ=255) aaGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGcttct > 1:255984/1‑149 (MQ=255) aaGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGcttct < 2:47686/149‑1 (MQ=255) aGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGcttctt < 7:271167/149‑1 (MQ=255) gAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCTGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTg < 7:101381/149‑1 (MQ=255) gAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTg > 7:239344/1‑149 (MQ=255) gAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTg > 5:337722/1‑149 (MQ=255) gAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTg < 4:384833/149‑1 (MQ=255) aaaTGGGGCCACTTGGGGCCCCATTCTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTg < 2:108497/148‑1 (MQ=255) aTGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAATCGCAGCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTGGt < 5:4271/149‑1 (MQ=255) tGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCGGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTGGTa < 4:275305/149‑1 (MQ=255) gggCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTGGTACa > 7:341628/1‑149 (MQ=255) ccccAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTGGTACATTc < 2:318356/149‑1 (MQ=255) ccAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTGGTACATTCCt < 7:93515/149‑1 (MQ=255) ccAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTGGTACATTCCt < 5:141378/149‑1 (MQ=255) | GAACGTGGTGTTCTTCGAAGGTAACTACACCGAGTACGAAGCCGACCGCAAGAAGCGTCTGGGTGATGCTGCTGCCCAGCCGCACCGTGTACGGC‑ACAAGAAACTGGCCCAGTAAGCCGGTTTTCTGATGCACAAGAATGGGGCCCCAAGTGGCCCCATTTTTGTG‑CCTGGCGGACCGCTATAAATGGCGAGGCGAAGGTGTATTTTGTATACACTTACATAAAACGCACCAAATAATTTCAAAAAA‑ACGACATTTCGCCCTATTCCGGTGCGATTGCTTCTTGGTACATTCCT > NC_002947/788436‑788729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |