Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 955,153 | T→C | 13.0% | intergenic (+107/‑206) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 955,153 | 0 | T | C | 13.0% | 91.8 / 6.0 | 39 | intergenic (+107/‑206) | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
Reads supporting (aligned to +/- strand): ref base T (14/19); new base C (2/3); total (17/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.00e-01 |
CAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGA > NC_002947/955008‑955292 | cAGACCGCTGCGGATGTGCTGATGACCTACGCATGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCt < 8:194261/149‑1 (MQ=255) cAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCTGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCt < 4:315313/149‑1 (MQ=255) cAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCt < 2:179567/149‑1 (MQ=255) cAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCt < 2:251195/149‑1 (MQ=255) cAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCt < 4:19666/149‑1 (MQ=255) gACCGCGGCGGATGTGCTGATGACCTACGCACGCGGACACTGCGGCCTGTTGCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGt < 6:175775/149‑1 (MQ=39) ccGCTGCTGATGTGCTGATGACCTACGCAAGCTGAAACTTCTGCCTGTTTCACGAAATCCCCGGACACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAg < 1:376974/149‑1 (MQ=39) ccGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAg < 3:219925/149‑1 (MQ=255) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTT‑CTGTGCTGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AGGAACCTTGTAGGAGc < 7:227531/149‑1 (MQ=25) cGGATGTGCTGATGACCTACGCACGCTGACACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCgg < 5:346320/149‑1 (MQ=255) cGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGc < 4:208217/147‑1 (MQ=255) cGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCgg < 5:23069/149‑1 (MQ=255) atgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCcgc < 8:24215/148‑1 (MQ=255) tGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTAG‑CGGGTTAAACCGGGACTAC‑AAGGTTGCGGTAGGAGCGGGTTTGCCCGGGGAGAGGGCCGca > 8:283723/1‑146 (MQ=255) gctgcCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGt < 3:211245/108‑1 (MQ=255) gctgcCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGt > 4:211245/1‑108 (MQ=255) tGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTGCTAC‑AAGGTTGCTGTAGGAGCGGGTTTTCCCGCGAAGAGGCCAGCACAGaaaaattaaaatt > 7:259401/1‑148 (MQ=255) cccGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTTAAACCCCTGCTTC‑AAGGTTGCGGTTTGGGCGGGTTTTACCGCGAAGAGGCCCGCCCAGAAAAATAAAAATAACTGGTTTTaaaa > 7:36245/1‑148 (MQ=255) cccGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AGGAACCTTGTAGGAGc < 5:98944/94‑1 (MQ=18) cccGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AGGAACCTTGTAGGAGc > 6:98944/1‑94 (MQ=18) cccGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTAAACCcgctcc > 4:154755/1‑106 (MQ=255) cccGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTAAACCcgctcc < 3:154755/109‑4 (MQ=255) cTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCATAGCCGGGTAAAACC‑CGCCGACAAAGGTGACGGTGGGGGCGGGGTTAAGC‑CGAAGGGGCCCCCCCACAAAAAAAAAAAAAACAGCTTTTTaaaaaaaaaaat > 6:233991/1‑143 (MQ=255) cGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑GGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGaaaa < 4:256619/149‑1 (MQ=255) ggggTATTTTTCCTGTGCCGCCCTCTTCG‑CGTATAAACCCGAAAATAA‑AAGTTTCCTTTAGTTGCGTTTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACa < 5:233991/148‑1 (MQ=255) ttCG‑CGGGTAAACCCGCTCCGAC‑AAGGTTCCAGTAGGAGCGGGGTTACCCCGGAACAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGAGCTGAAAAGTTCGAATAAAACAGGAATTATTCCTTTACTGGCATCCTg > 6:74702/1‑149 (MQ=255) g‑cgGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGttt < 8:259401/149‑1 (MQ=255) g‑cgGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGACAGCACAGAAAAATAAAAATTCCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGATATTATACTTAACTGGAATCCTGgtt > 2:363793/1‑149 (MQ=37) gggTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGa > 4:350728/1‑101 (MQ=255) gggTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGa < 3:350728/101‑1 (MQ=255) aCCCGCTCCTAC‑AGGAACCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCtaataa < 7:54410/108‑1 (MQ=21) aCCCGCTCCTAC‑AGGAACCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCtaataa > 8:54410/1‑108 (MQ=21) aCCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTa > 2:153419/1‑149 (MQ=255) cccGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAt > 3:222902/1‑149 (MQ=255) ccGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtc > 2:35243/1‑149 (MQ=255) ccGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtc > 8:290760/1‑149 (MQ=255) tCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtcttct > 7:17375/1‑149 (MQ=255) cTAC‑AAGTTTCTTTTTGGTGGGGTTTAACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtcttct < 3:384897/147‑1 (MQ=255) tAC‑AAGGATCCTGTAGGAGCGCGTTTAACAGCGAAGAGGCCATCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAAAAGGAAATTATCCTTTACATTCATACTGTTTCGGAACTATCTTATGa > 6:215947/1‑148 (MQ=255) | CAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCG‑CGGGTAAACCCGCTCCTAC‑AAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGA > NC_002947/955008‑955292 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |