Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,184,588 | G→C | 17.1% | intergenic (‑204/‑208) | mltF ← / → purL | membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,184,588 | 0 | G | C | 17.1% | 93.3 / 14.8 | 41 | intergenic (‑204/‑208) | mltF/purL | membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase |
Reads supporting (aligned to +/- strand): ref base G (20/14); new base C (4/3); total (24/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.04e-01 |
GTAGCGGGTTGTGTGGTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGTGCCGAAAGCCA > NC_002947/1184445‑1184736 | gtcgccggtggtGGGGTTGGCGGATGGGTGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGATATATTAAGCGCCTGAGAGATCGAGCGCCGAGATGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCgcgggcgg < 8:104602/142‑1 (MQ=255) gTAGCGGGTTGTGTGGTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCgcgggc < 5:50512/146‑1 (MQ=255) cgtgggggggggAGGGGCGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGCTCGAGCGCCGCCCGCGCGGCGCTCGATCTca < 5:353904/142‑1 (MQ=37) gtgGTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTcac > 7:333581/1‑149 (MQ=255) aGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCGCCCAGgcgctgcat > 8:352215/1‑144 (MQ=255) tGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAg < 8:333581/148‑1 (MQ=255) cATCAGGGCTGCGAGGTGGCCGGCTTGAGATATTCAGCGCCTGTTATAGCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCg < 6:359557/149‑1 (MQ=255) aTCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCgg > 8:304892/1‑149 (MQ=255) aGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGaca > 8:337928/1‑149 (MQ=255) ggCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGAtc < 3:222338/117‑1 (MQ=255) ggCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCCCGCGCGGCGCTCGAtc > 4:222338/1‑117 (MQ=255) tGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTgc > 1:49768/1‑149 (MQ=255) tGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTgc > 6:187512/1‑149 (MQ=255) cAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTgcg‑‑gc < 7:337928/149‑1 (MQ=255) gCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGa > 5:69479/1‑149 (MQ=255) gagaTATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGtct > 2:358131/1‑149 (MQ=255) gagaTATTCAGCGCCTGCGAGACCGAGCGCCGCCAGGTGCCCGCCTTAAGATATTCAGCCCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGtc < 8:60369/148‑1 (MQ=255) tatTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAg > 2:118168/1‑149 (MQ=255) tatTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAg < 6:69479/149‑1 (MQ=255) cAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCgg > 6:259765/1‑149 (MQ=255) gcCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCACCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGacac < 5:259765/149‑1 (MQ=255) cTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACct > 4:118032/1‑149 (MQ=255) aTCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGaaaa > 1:2455/1‑149 (MQ=255) aGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACctc < 1:237503/139‑1 (MQ=255) aGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACctc > 2:237503/1‑139 (MQ=255) gcgcCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGCCACCTGCG‑‑GCGCTCGCTCTCGTCTCAAGCCggtc > 4:33922/1‑131 (MQ=255) ccAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGCTCTCACAGGCGCAGAATGTGTCGAGACGGACACCTGCG‑‑GCGCTCTATCTCGTCTCAAGCCGGACACCTCTGAAAACTTACCCCGaa < 7:207091/149‑1 (MQ=255) tgtCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCg > 7:30294/1‑149 (MQ=255) gtCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCgg < 1:180171/149‑1 (MQ=255) cTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTccgc > 5:382513/1‑149 (MQ=255) ttAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTccgcc > 3:318916/1‑149 (MQ=255) atatTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGCAGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCgccgcc < 1:118168/149‑1 (MQ=255) ctgtGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCATAGGCGCTGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGc > 3:386219/4‑149 (MQ=37) ctgtGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGCCACCTCTGAAACCTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTgc > 7:272048/4‑147 (MQ=37) tGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCt > 5:170918/1‑147 (MQ=255) tGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTa < 8:30294/149‑1 (MQ=255) agaTCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGAcc < 3:99319/110‑1 (MQ=255) agaTCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGAcc > 4:99319/1‑110 (MQ=255) gAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAg < 5:187512/148‑1 (MQ=255) aGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGt > 6:349909/1‑149 (MQ=255) aGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGt < 1:358131/149‑1 (MQ=255) ccgcGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGTCCACCAGCG‑‑GCGCTAGATATCGTCGCAAGCCGGGCACCTCTGCAAACGGCCCCCGCAGTCCGGTTCCGCCGCCCGGCAGGCGTGGGTTAGAGCAGGTGcc > 1:87107/1‑148 (MQ=255) cgcgGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCTGCCCGGCAGGCGTGGCTTAGAGCAGGTGCCGaaa < 7:352215/149‑1 (MQ=255) gcgggcggCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGTGCCGAAAg < 7:304892/149‑1 (MQ=255) ggcggcGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGTGCCGAAAGCCa < 4:318916/149‑1 (MQ=255) | GTAGCGGGTTGTGTGGTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCG‑‑GCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGTGCCGAAAGCCA > NC_002947/1184445‑1184736 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |