| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,330,501 | G→A | 6.8% | intergenic (+32/‑275) | PP_5SE → / → PP_1157 | 5S ribosomal RNA/acetolactate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,330,501 | 0 | G | A | 6.8% | 337.1 / 9.7 | 117 | intergenic (+32/‑275) | PP_5SE/PP_1157 | 5S ribosomal RNA/acetolactate synthase |
| Reads supporting (aligned to +/- strand): ref base G (49/60); new base A (6/2); total (55/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.39e-01 | |||||||||||
Only 100 of 117 total aligned reads displayed.
GATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACGCAGCATTAACGT > NC_002947/1330382‑1330645 | gATCCCACCCCGAACTGCGTAGTGAAACGATGCATCGCCGATGGAAGTGTGGGGTTTCCCCATGCGACAGTAGGTCATCGTCAACATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAAt < 4:304086/149‑1 (MQ=11) atcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAAtt < 6:335045/149‑1 (MQ=31) tcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATTGTATTGTGGGGTTTCCCCATGTGATTTTATGTCATCGTCAATATTCATTCACGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAAtt < 1:106822/149‑1 (MQ=11) tcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTGGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAAtt < 8:200799/148‑1 (MQ=14) tcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAAtt < 2:116374/148‑1 (MQ=31) tcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTg < 1:325849/149‑1 (MQ=32) cccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTA‑GGGTTTTGTCTTTGTGGGCAAAAAATTGGa > 6:299957/1‑149 (MQ=18) ccttcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTgg < 5:386183/145‑1 (MQ=17) ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTgg < 4:378079/148‑1 (MQ=32) ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGa > 6:144119/1‑149 (MQ=33) ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGa > 7:107125/1‑149 (MQ=33) catcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAc > 5:283352/1‑149 (MQ=34) atcccGAACTCAGTAGTGAAACGATGCATCGCCTATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACGCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAc‑c < 2:78691/149‑1 (MQ=21) ccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAAtt < 4:163837/141‑1 (MQ=31) ccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAAtt > 3:163837/1‑141 (MQ=31) ccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑c > 5:134534/1‑149 (MQ=34) gAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTc > 3:24336/1‑149 (MQ=35) tCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGa > 2:137717/1‑138 (MQ=33) tCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCga > 3:45878/1‑147 (MQ=37) agtagtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGa < 6:77450/136‑1 (MQ=33) agtagtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGc > 2:361802/1‑149 (MQ=40) tagtTAAACTATGCATCGGCGATGGTAGTGGGGGGTTTCCTACCCAGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGc < 1:131944/147‑1 (MQ=14) gtGATACGATGCATCGCCGATGGTAGTGTGTGGTTTCGCCTTGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCTCAAAACACCTATCTGCGGACGCATGTTGGGGTTTTGTCTTTGTGGTGAAAAAATTGGAC‑CTT‑‑‑CTCGAGAGCGga < 4:277882/148‑1 (MQ=14) tGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCACGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCg > 6:274569/1‑145 (MQ=255) tGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCg > 3:161915/1‑145 (MQ=40) gAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGATAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGAt > 7:16922/1‑149 (MQ=255) gATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCAc > 7:279511/1‑149 (MQ=255) aTCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATg > 1:15607/1‑140 (MQ=255) aTCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATg < 2:15607/140‑1 (MQ=255) aTCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCt > 2:394630/1‑149 (MQ=255) cGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACAGGCTTc > 6:83281/1‑149 (MQ=255) ccGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGc < 7:235974/149‑1 (MQ=255) ccGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGc < 4:161915/149‑1 (MQ=255) gATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCg < 4:348259/149‑1 (MQ=255) gtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgcg > 3:390351/1‑149 (MQ=255) tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCgg < 1:394630/149‑1 (MQ=255) ggggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCggg > 4:214122/1‑149 (MQ=255) gTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGt < 8:88045/147‑1 (MQ=255) gTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGt > 7:88045/1‑147 (MQ=255) gTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTa > 2:60845/1‑148 (MQ=255) tttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgc > 3:234002/1‑142 (MQ=255) tcccccATGTGACAGTAGCTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTCCGCACGCAGATAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCCGGTAAAc < 8:16922/147‑1 (MQ=21) cccATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCg > 7:187441/1‑149 (MQ=255) ccATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGc < 6:42216/149‑1 (MQ=255) aTGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTA‑GGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTTTACCCGcgaa < 5:299957/149‑4 (MQ=255) tgtgAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTTTACCCGcgaa < 6:166143/149‑4 (MQ=255) tgtgAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTcc < 4:172170/149‑1 (MQ=255) tgtgAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTACGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTcc < 4:27109/149‑1 (MQ=255) gtgAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTcc < 8:279511/148‑1 (MQ=255) tgAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTaa > 4:325409/1‑138 (MQ=255) tgAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTaa < 3:325409/138‑1 (MQ=255) tgAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTa < 3:214122/149‑1 (MQ=255) agagTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTaga < 7:254872/149‑3 (MQ=255) agTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACaga < 4:134130/149‑1 (MQ=255) gTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACagag > 4:157455/1‑149 (MQ=255) ggTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACTGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGAt < 1:273194/149‑1 (MQ=255) gTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATg < 1:60845/149‑1 (MQ=255) tCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATgg > 3:375115/1‑149 (MQ=255) aTCGTCAAGATTCATT‑TCTCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTg < 1:361802/149‑1 (MQ=255) tCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGc > 7:93848/1‑149 (MQ=255) gtgaaGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGGGCGGAGAAGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCg > 1:27912/4‑148 (MQ=255) gTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCg > 5:123022/1‑148 (MQ=255) tCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGgt < 7:75230/110‑1 (MQ=255) tCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGgt > 8:75230/1‑110 (MQ=255) tCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGaa < 4:24336/149‑1 (MQ=255) aaGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAg < 2:3484/148‑1 (MQ=255) ataTTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTATGGGTTTTTTCTTTGTGGGCAAAAAATTGGAC‑CTGCTCCTCCAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGaa < 1:122570/147‑1 (MQ=21) gATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑GTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCa < 5:118185/149‑1 (MQ=255) gATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTCTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAg < 3:55432/146‑1 (MQ=255) aTTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATg > 8:89202/1‑137 (MQ=255) aTTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATg < 7:89202/137‑1 (MQ=255) aTTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAg < 8:13677/149‑1 (MQ=255) aTTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTGTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAg < 5:322424/149‑1 (MQ=255) ttCATT‑TCGCAACTCCCCTATCTCCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAACTTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAgg < 4:45878/149‑1 (MQ=255) acaaagacAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCt > 7:21775/8‑149 (MQ=37) aTT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCt < 7:96530/148‑1 (MQ=255) aTT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCt < 5:144119/148‑1 (MQ=255) aTT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTa < 2:380226/149‑1 (MQ=255) tt‑tCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGc > 7:220557/1‑146 (MQ=255) t‑tCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAg > 8:261906/1‑148 (MQ=255) gCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAAt < 8:220557/148‑1 (MQ=255) cAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAAt < 3:170960/147‑1 (MQ=255) cAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAAt > 4:170960/1‑147 (MQ=255) aaaaCCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGc < 4:390351/149‑1 (MQ=255) aaaaCCCCTACCTGCGTGCGCAGATAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGc > 6:125171/1‑149 (MQ=255) ccccTACCTGCGTGCGCAGATAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTc > 4:260206/1‑148 (MQ=255) cccTATCTGGGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCaa < 8:187441/149‑1 (MQ=255) cccTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGACAATG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTc > 1:101672/1‑148 (MQ=255) cccTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCaa > 5:196493/1‑149 (MQ=255) cccTACCTGCGTGCGCAGATAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACACGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCaa > 8:85514/1‑149 (MQ=38) ccTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAAc > 1:216041/1‑149 (MQ=255) ccTACCTGCGTGCGCAGATAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGa < 6:148072/138‑1 (MQ=255) ccTACCTGCGTGCGCAGATAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGa > 5:148072/1‑138 (MQ=255) tGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACgcagca > 4:64275/1‑149 (MQ=255) cgcacgcaGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGaa < 1:137321/131‑1 (MQ=255) cgcacgcaGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGaa > 2:137321/1‑131 (MQ=255) cacgcaGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATCGTGCGAAGCCAGGCTAGAATGGCCTCGAAGCACCATTaa > 1:135540/1‑149 (MQ=255) acgcaGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACGCAGCATTAAc < 4:375115/149‑1 (MQ=255) acgcaGGTAGGGGTTTTGTCTTTGGTGGCAAAAAATTGGAC‑CTG‑‑‑CGCGAGAGCTGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACGCAGCATTAAc < 5:83281/149‑1 (MQ=255) gcaGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACGCAGCATTAACGt > 6:13582/1‑149 (MQ=255) | GATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATT‑TCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGTTTTGTCTTTGTGGGCAAAAAATTGGAC‑CTG‑‑‑CTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACGCAGCATTAACGT > NC_002947/1330382‑1330645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |