| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,356,054 | G→C | 5.8% | intergenic (+321/‑71) | PP_1180 → / → PP_1181 | hypothetical protein/two‑component system response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,356,054 | 0 | G | C | 5.8% | 258.2 / 4.9 | 81 | intergenic (+321/‑71) | PP_1180/PP_1181 | hypothetical protein/two‑component system response regulator |
| Reads supporting (aligned to +/- strand): ref base G (32/44); new base C (2/3); total (34/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 | |||||||||||
TATTTTTCTGCACCGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACC > NC_002947/1355906‑1356197 | tATTTTTCTGCACCGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCg > 5:389433/1‑149 (MQ=255) tttttCTGCACCGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCa < 3:158593/149‑1 (MQ=37) tttCTGCACCGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAg < 2:334088/148‑1 (MQ=255) tacaccACCGTGAAGCCCTTGGGCCGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGGTCAGACGAGGGGGCGGTAGGGCGTGGCTGAAGAGCTGGGGGG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGGCTCGCAgg < 5:97608/143‑1 (MQ=255) tGCACCGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGccc > 5:256471/1‑149 (MQ=255) gCACCGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGcccc > 7:83331/1‑149 (MQ=255) cACCGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGccccc > 7:234599/1‑149 (MQ=255) cACCGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGccc < 6:357637/147‑1 (MQ=255) cACCGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGGGCCCTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCAggcac < 8:27898/147‑4 (MQ=21) ccGTGAAGCCCGTGGGCAGTGTGTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCa < 6:224517/149‑1 (MQ=255) cGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCAt < 5:124736/149‑1 (MQ=255) cGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCAt < 1:128544/149‑1 (MQ=255) gTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATc < 3:165628/149‑1 (MQ=255) tGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATc > 3:226860/1‑148 (MQ=255) gAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCt > 3:76916/1‑148 (MQ=255) aGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTAc < 6:243927/148‑1 (MQ=255) accTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACAtt < 8:83331/148‑1 (MQ=255) ccTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACAtt > 7:51349/1‑148 (MQ=255) ttGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCCCCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCa > 1:244774/1‑148 (MQ=255) gggCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATa < 8:51349/148‑1 (MQ=255) gcgCACTTATTTTTGGGAGCGAAGCCTCTCACAAAAAAAGCAACAGTCTAAGGCCCGCTAGCGAGTGTCTCAATCACTTGGGTG‑CCTGGGAGATCGAGCACAGCCAGCGGACCGCAAGGACTCCCAGGCCACCCCAACTACAAACATa > 8:249862/3‑148 (MQ=255) ggCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATAc < 4:164707/148‑1 (MQ=255) cAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATActc > 7:31284/1‑148 (MQ=255) aGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACtctc < 1:393649/149‑1 (MQ=255) aGTTTTTTTTGGGAGCGAAGACTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGAGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGACCCCCATCTACATTCAAGctct > 4:132366/1‑148 (MQ=255) gTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCa < 2:328267/149‑1 (MQ=255) ttttttttGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATTGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAg < 6:389433/149‑1 (MQ=255) ttttttttGGGCGCGAAGCCTGTCACAAAAAACGGTCCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAg > 4:184369/1‑149 (MQ=255) tttGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGc < 4:197767/148‑1 (MQ=255) gggCGCGATGCGTGTCACAATAAACGGTTCAGTCGTGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTTGGAGATCGAGCACCGCCCGCGGGGAGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCt < 2:244774/148‑1 (MQ=255) ggCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGa < 6:122315/149‑1 (MQ=255) gcgcGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGac < 2:153979/149‑1 (MQ=255) cagcgAAGCCTGTCACAAAAAACGGTACAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCCGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGa > 4:266443/3‑148 (MQ=255) cgcgAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGaca < 1:184182/149‑1 (MQ=255) gcgAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGacac > 3:366741/1‑149 (MQ=255) gAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGa < 4:283988/149‑1 (MQ=255) ccTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCGCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATccc < 4:323515/149‑1 (MQ=255) tCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCt < 2:168084/134‑1 (MQ=255) tCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCt > 1:168084/1‑134 (MQ=255) tCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCaa < 4:366741/147‑1 (MQ=255) tCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAg > 2:165405/1‑148 (MQ=255) aaaaaaCGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGCGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATACATACTCTCAGC‑AGCCCTGACACGTTCCCACGaaca > 8:131795/1‑148 (MQ=39) aaaaaCGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGaacaac < 4:227270/149‑1 (MQ=255) aaaaaCGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGaacaac < 1:165405/149‑1 (MQ=255) aaCGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCATGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAg > 7:130337/1‑149 (MQ=255) aaCGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAg < 4:226860/149‑1 (MQ=255) aGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGc > 7:157428/1‑149 (MQ=255) gAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACACTCCGC‑TGCCCTGCCACGATCCCAAGAACAACAAGGCCAACGCCATg > 8:255720/1‑149 (MQ=255) gAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCGACATTCATACTCTCAGC‑TGCCCTGACACCATCCCAAGAACAACAAGGCCAAAGCCATg > 2:206492/1‑149 (MQ=255) gCGGTAGGGCGTGTCTGAAGATCTGGTGTG‑CCTGGTAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGaccac < 3:132366/149‑1 (MQ=255) ggTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATCGACCAccc > 8:342849/1‑149 (MQ=255) gTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCAccc > 5:346189/1‑148 (MQ=255) tgtCTGAAGATCTGGGGTG‑CCTGGGAGATCGTGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCATGCCCTGACTCGATCCCTAGAACAACAAGGCCAAAGCCATGGACCACCCCATAcccc < 1:107498/149‑1 (MQ=255) cTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCAt > 8:112963/1‑149 (MQ=255) tGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCTATGTTCATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATc < 7:255720/149‑1 (MQ=255) aaGATCTGGGGTG‑CCTGGGAGATCGAGCAGCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAACCATGGACCACCCCATAGCCCGCATc < 4:126225/147‑1 (MQ=255) aaGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATc < 6:346189/147‑1 (MQ=255) aTCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATCCCCCGCATCCTCAt > 6:113813/1‑149 (MQ=255) tCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCAtc > 8:364654/1‑149 (MQ=255) gggTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATTGACCACCCCATACCCCGCATCCTCAtcgt < 7:342849/147‑1 (MQ=255) gggcccTGCGAGACCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCAtcgtcg > 4:53108/5‑147 (MQ=21) g‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAga < 2:366669/149‑1 (MQ=255) tGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAgacga > 2:346751/1‑149 (MQ=255) gggAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAgacgac > 5:347225/1‑149 (MQ=255) ggAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAgacgac < 8:31284/148‑1 (MQ=255) ggAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAgacgac < 8:157428/148‑1 (MQ=255) agaCCGAGCGCCCCGCGGGCGGTGCTCGATCTCCCA‑GGCACCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAgc < 3:53108/149‑1 (MQ=37) gaTCGAGCACCGACCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCGGACACGATCCCTATCACAACATGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAgc < 7:249862/149‑1 (MQ=255) aTCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAgc < 8:234599/148‑1 (MQ=255) cGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAgcgc > 4:20089/1‑148 (MQ=255) aGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCa < 3:336479/120‑1 (MQ=255) aGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCa > 4:336479/1‑120 (MQ=255) cACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGc < 7:112963/149‑1 (MQ=255) aCCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCCCCCCATAACCCGCATGCTCATCGTCGAAGACGACCAGCGCCACGcc > 3:229325/1‑149 (MQ=255) cgcccgcGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCg > 6:331286/1‑148 (MQ=255) gcccgcGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGaa < 3:266443/149‑1 (MQ=255) gcccgcGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGaa < 5:331286/149‑1 (MQ=255) ggTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATAc < 3:20089/149‑1 (MQ=255) ggTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATAc < 4:76916/149‑1 (MQ=255) gTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATAcc > 1:88068/1‑149 (MQ=255) tcGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAgacga < 2:104876/114‑1 (MQ=255) tcGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAgacga > 1:104876/1‑114 (MQ=255) | TATTTTTCTGCACCGTGAAGCCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTG‑CCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGC‑TGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACC > NC_002947/1355906‑1356197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |