BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	1,383,254	A→T	10.1%	L16Q (CTG→CAG)	PP_1204 ←	lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,383,254	0	A	T	10.1%	308.6 / 20.8	126	L16Q (CTG→CAG)	PP_1204	lipoprotein
Reads supporting (aligned to +/- strand): ref base A (52/60); new base T (4/9); total (57/69)
Fisher's exact test for biased strand distribution p-value = 3.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.50e-01

Only 100 of 133 total aligned reads displayed.

CACACGTCGCTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTACTC  >  NC_002947/1383106‑1383401

cccacGGCGCTGCGGACGCTCCATCACCTTCGGCTCGCCGACATCGCTCTGCAGGGTCTGCTCGAGCAGTTTGCGCTCGACGCGCGCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGGAGGGCGCCGcaca                                                                                                                                                      <  8:317780/147‑1 (MQ=255)

 acacGTCGCTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAg                                                                                                                                                     >  4:13619/1‑149 (MQ=255)

   acGTCGCTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTg                                                                                                                                                   >  4:224394/1‑149 (MQ=255)

         cTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGgcg‑c                                                                                                                                            <  4:89054/149‑1 (MQ=255)

          tGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACTGTGCGGCG‑cc                                                                                                                                           <  8:329725/149‑1 (MQ=255)

            cGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACTGTGCGGCG‑ccc                                                                                                                                          <  2:25768/148‑1 (MQ=255)

            cGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACTGTGCGGCG‑ccc                                                                                                                                          <  2:218152/148‑1 (MQ=255)

            cGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑cccc                                                                                                                                         >  3:336071/1‑149 (MQ=255)

             ggAAGCTCCATCACCTTCGGCTCGCCGACTTCGATCTGCAGGGTATGCTCGATCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCGGGGACATCTGGTGGG‑CCCAGCCGCTGACGAGCGGGGCGCCGCACTGTGCGGCG‑ccctg                                                                                                                                        <  1:219234/149‑3 (MQ=255)

              gAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCCGCG‑ccccc                                                                                                                                        >  6:223642/1‑148 (MQ=255)

               aaGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCaa                                                                                                                                      <  3:212088/149‑1 (MQ=255)

                 gCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAgg                                                                                                                                    <  3:293357/149‑1 (MQ=255)

                 gCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAgg                                                                                                                                    <  6:282699/149‑1 (MQ=255)

                   tCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAggg                                                                                                                                   >  7:204839/1‑148 (MQ=255)

                    ccATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGt                                                                                                                                  >  1:93147/1‑148 (MQ=255)

                     cATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTaa                                                                                                                                <  3:291672/149‑1 (MQ=255)

                     cATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTa                                                                                                                                 >  6:25368/1‑148 (MQ=255)

                     cATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACACAGCGGCGCCCCCCAAggga                                                                                                                                  >  8:315602/1‑147 (MQ=255)

                      aTCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTa                                                                                                                                 >  2:346073/1‑147 (MQ=255)

                         aCCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAgg                                                                                                                             <  3:285557/148‑1 (MQ=255)

                           cTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGTCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTa                                                                                                                           <  1:106900/149‑1 (MQ=255)

                           cTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTAc                                                                                                                          >  6:131997/1‑149 (MQ=255)

                                gCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGc                                                                                                                     >  4:292586/1‑149 (MQ=255)

                                    gCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTg                                                                                                                  <  6:98806/148‑1 (MQ=255)

                                      cGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCGCAGTGCGGCG‑CCCCCAAGGGTaa                                                                                                                                <  7:77314/132‑1 (MQ=255)

                                      cGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCGCAGTGCGGCG‑CCCCCAAGGGTaa                                                                                                                                >  8:77314/1‑132 (MQ=255)

                                      cGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCtt                                                                                                                   >  3:174765/1‑145 (MQ=255)

                                      cGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTAc                                                                                                               <  2:267401/149‑1 (MQ=255)

                                       gACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACa                                                                                                              >  5:312834/1‑149 (MQ=255)

                                        aCATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCCAGGGTAAAGGTAATTAGCTTTTACaa                                                                                                             >  5:236620/1‑148 (MQ=255)

                                          aTCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGa                                                                                                           <  1:105574/149‑1 (MQ=255)

                                          aTCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCCCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTAATTCGCTTGTAAAtca                                                                                                           >  8:150188/1‑147 (MQ=255)

                                           tCGATCTCCCGGGTAGGCGCGAGCTGTTTGCGCTCGACGGGCTCCTCATGGTCGGTGCGCTGGGACATGTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGAt                                                                                                          <  6:118126/149‑1 (MQ=255)

                                                 tGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCg                                                                                                    >  5:110302/1‑149 (MQ=255)

                                                 tGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCg                                                                                                    >  7:185850/1‑149 (MQ=255)

                                                   cAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGt                                                                                                   <  3:328747/148‑1 (MQ=255)

                                                   cAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTg                                                                                                  <  4:336071/149‑1 (MQ=255)

                                                    aGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGGTAAGGTACTTCGCTTGTACATGATAACTCGTGc                                                                                                 >  6:37164/1‑149 (MQ=255)

                                                     gggTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCa                                                                                                >  6:158701/1‑149 (MQ=255)

                                                      ggTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCAt                                                                                               >  2:74150/1‑149 (MQ=255)

                                                        tATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTg                                                                                             <  7:85062/149‑1 (MQ=255)

                                                        tATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTg                                                                                             >  5:132638/1‑149 (MQ=255)

                                                         aTGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTg                                                                                             <  1:335469/148‑1 (MQ=255)

                                                          tGCTCGAGCAGTTTGCGCTCGACGCGCTCCTGATGGTCGCTGCGCTGGGACATCTGTTGGG‑CTCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCTCTTGTACATGATCACTCGTGCATTgg                                                                                            <  7:279623/148‑1 (MQ=255)

                                                          tGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGt                                                                                           <  4:70312/149‑1 (MQ=255)

                                                           gCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGtt                                                                                          >  2:174714/1‑149 (MQ=255)

                                                           gCTCGAGCAGTTAGCGCGCGACGCGCTCCTCATGGCCCCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCGGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGtt                                                                                          <  8:292421/149‑1 (MQ=255)

                                                            cTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGtt                                                                                          <  5:25368/148‑1 (MQ=255)

                                                             tCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTAt                                                                                        >  7:4811/1‑149 (MQ=255)

                                                               gAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTAt                                                                                        <  1:346073/147‑1 (MQ=255)

                                                               gAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTAt                                                                                        >  5:287862/1‑147 (MQ=255)

                                                               gAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATAACTCCTGCATTGGGTAt                                                                                        >  6:272198/1‑147 (MQ=255)

                                                               gAGCAGTTTGCGCTCGACGCGCTCCGCATGGTCGCTGCGCTGGTACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATc                                                                                       <  4:320643/148‑1 (MQ=255)

                                                                  cAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAgcg                                                                                   >  1:141420/1‑149 (MQ=255)

                                                                   aGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAgcgg                                                                                  <  1:206939/149‑1 (MQ=255)

                                                                    gTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCGGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAgcggc                                                                                 <  4:257476/149‑1 (MQ=255)

                                                                     ttggcgcgcGACGGGCGCCACATGGGCGCTGCGCTGGCACTTCTGGTGGC‑CGCAGCCGCGCACGAGCCGGGCGCCGCACTGGGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAgcggc                                                                                 <  2:378710/145‑1 (MQ=255)

                                                                              gACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCgg                                                                         <  7:301842/147‑1 (MQ=255)

                                                                              gACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGc                                                                       <  1:83357/149‑1 (MQ=255)

                                                                                 gcgcTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACTGTGCGGCG‑cc                                                                                                                                           >  4:139670/1‑78 (MQ=255)

                                                                                  cgcTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGc                                                                   <  2:93147/149‑1 (MQ=255)

                                                                                  cgcTCCTCATGGGCGCTGCGCTGGGACATCTGGTTGT‑CGCAGCCGCTGACTAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGc                                                                   <  5:223642/149‑1 (MQ=255)

                                                                                   gcTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGCGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCa                                                                  <  8:246983/149‑1 (MQ=255)

                                                                                       ctcATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAgg                                                                <  6:132638/147‑1 (MQ=255)

                                                                                          aTGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGt                                                           >  8:118605/1‑149 (MQ=255)

                                                                                          aTGGTCGCTGCGCGGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAg                                                             <  8:4811/147‑1 (MQ=255)

                                                                                           tGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTc                                                          <  5:131997/149‑1 (MQ=255)

                                                                                            ggTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACACTGCCGCG‑CCCCCAAGGGGAAAGGTACTTCGCTTGTACAATAACACACGGTGATTGGTTAACAGCGGCGCACCGGGGCCTGCAGGAAAGTc                                                          >  2:90652/1‑148 (MQ=255)

                                                                                                gctgcgctgGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCCAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGGATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAg                                                        >  3:143554/1‑146 (MQ=255)

                                                                                                gctgcgctgGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCAc                                                     <  1:90652/149‑1 (MQ=255)

                                                                                                gctgcgctgGGACAGCTGGTTGG‑CGCTGCCGCTGACGTGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAg                                                        <  4:143554/146‑1 (MQ=255)

                                                                                                     gctgGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCAt                                                >  1:103641/1‑149 (MQ=255)

                                                                                                       tgGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCCCAGTGCGGCG‑CCCCCAAGGGTAAATGTACTTCGCTTGTAAATGATCACTCGGGCATTGGGTATCAGCGGCGGACGCGGGCCTGCAGGAAGGTGAGCACTTCAtt                                               >  6:326806/1‑148 (MQ=255)

                                                                                                        gggACATCTGGTTGG‑CGCTGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGa                                             <  7:150188/149‑1 (MQ=255)

                                                                                                           aCATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATAAgc                                                                                    >  6:186166/1‑107 (MQ=255)

                                                                                                            cATCTGGGTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGGGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCgg                                         <  6:91802/149‑1 (MQ=255)

                                                                                                             aTCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCGTGTACATGATGACTCGTGCATTGGTTTTCAGCGGCGAACGCGGGCCTGCAGGAAGGTGAGCACGTCATTGAGCgg                                         >  7:325007/1‑148 (MQ=255)

                                                                                                               cTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCaa                                      >  7:29698/1‑149 (MQ=255)

                                                                                                                tGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTc                                                          <  8:237253/128‑1 (MQ=255)

                                                                                                                tGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTc                                                          >  7:237253/1‑128 (MQ=255)

                                                                                                                  gTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCAtt                                               <  2:317778/137‑1 (MQ=255)

                                                                                                                  gTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCAtt                                               >  1:317778/1‑137 (MQ=255)

                                                                                                                      g‑cgcAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTTTCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCggg                               >  8:366992/1‑149 (MQ=255)

                                                                                                                      g‑cgcAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTgg                               <  5:97422/149‑1 (MQ=255)

                                                                                                                            gCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTc                          <  1:174714/149‑1 (MQ=255)

                                                                                                                            gCCGCTGACGAGCAGGGCGCCGCACAGGGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTc                          <  6:7395/149‑1 (MQ=255)

                                                                                                                                   aCGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcg                   <  7:118605/149‑1 (MQ=255)

                                                                                                                                    ccttgggggCGCCGCACTGTGCGGCG‑CCCTCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTg                       <  5:332053/138‑1 (MQ=255)

                                                                                                                                    ccttgggggCGCCGCACTGTGCGGCG‑CCCTCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTg                       >  6:332053/7‑144 (MQ=255)

                                                                                                                                       gCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGc                                                                       >  5:52424/1‑93 (MQ=255)

                                                                                                                                        cAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcggtgcg              >  3:22525/1‑149 (MQ=255)

                                                                                                                                           ggCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcggtgcggtg           >  2:246566/1‑149 (MQ=255)

                                                                                                                                           ggCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcggtgcggtg           >  5:242897/1‑149 (MQ=255)

                                                                                                                                            gcgcCGCACTGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCggtgcggtgc          >  8:1621/1‑149 (MQ=255)

                                                                                                                                              gccgcACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCtt        <  4:22525/149‑1 (MQ=255)

                                                                                                                                                 gcACAGTGCGGCG‑CCCCCAAGCGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTa     <  8:201577/149‑1 (MQ=255)

                                                                                                                                                   acaGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTACt   >  2:141800/1‑149 (MQ=255)

                                                                                                                                                    caGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCACCGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTACTc  <  6:312834/149‑1 (MQ=255)

                                                                                                                                                    caGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTACTc  <  5:37164/149‑1 (MQ=255)

                                                                                                                                                     aGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTACTc  >  7:367202/1‑148 (MQ=255)

CACACGTCGCTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGG‑CGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTACTC  >  NC_002947/1383106‑1383401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`