| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,385,147 | G→A | 5.1% | intergenic (‑117/+44) | proS ← / ← oprD | proline‑‑tRNA ligase/basic amino acid specific porin OprD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,385,147 | 0 | G | A | 5.1% | 295.4 / 3.3 | 97 | intergenic (‑117/+44) | proS/oprD | proline‑‑tRNA ligase/basic amino acid specific porin OprD |
| Reads supporting (aligned to +/- strand): ref base G (49/43); new base A (3/2); total (52/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.53e-01 | |||||||||||
GGGTGGCGAGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGCCTGACGCACG > NC_002947/1385000‑1385293 | gggTGGCGAGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGt < 4:106790/149‑1 (MQ=255) ggTGGCGAGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGt > 5:319804/1‑148 (MQ=255) ggTGGCGAGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTg < 2:186201/149‑1 (MQ=255) gAGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGcc > 8:373298/1‑149 (MQ=255) aGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCg < 6:200429/149‑1 (MQ=255) aGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCg < 1:40116/149‑1 (MQ=255) gCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCgg < 7:373298/149‑1 (MQ=255) gCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCgg < 7:369595/149‑1 (MQ=255) aaaTATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGc > 3:149031/1‑149 (MQ=255) aaaTATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGc > 7:366840/1‑149 (MQ=255) aaaTATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGc < 6:364912/149‑1 (MQ=255) aaaTATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGc > 6:302981/1‑149 (MQ=255) ttGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCtttt < 8:62714/148‑1 (MQ=255) gACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCAATCACGCCGGGCTTTTTc < 6:321190/148‑1 (MQ=255) aCTGGTGCGCATTGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAg < 6:267592/149‑1 (MQ=255) aCTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCAATCACGCCGGGCTTTTTct < 2:238872/148‑2 (MQ=255) tGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGt > 2:389688/1‑149 (MQ=255) gggcgcATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGc < 7:147333/147‑1 (MQ=255) gTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGc > 2:366508/1‑149 (MQ=255) tGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCG‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCg > 1:288578/1‑149 (MQ=255) gcATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCgggg > 6:188310/1‑149 (MQ=255) tGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCG‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCAc < 2:288578/149‑1 (MQ=255) gTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTg > 7:71185/1‑149 (MQ=255) gtctCGATTGCCTAAGACGTTGAAATAGACCCCCATTGTACGGGGGGGAAACGAATGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAACAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTAAGGGGCAATCCAAGccc > 4:331364/4‑148 (MQ=255) gATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCtt < 8:366840/149‑1 (MQ=255) gATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCt > 6:143989/1‑148 (MQ=255) aTTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTa > 5:29988/1‑149 (MQ=255) gCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACa < 4:127962/148‑1 (MQ=255) gCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACa < 6:319804/148‑1 (MQ=255) ccTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAg > 6:173958/1‑148 (MQ=255) ccTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAg < 1:389688/148‑1 (MQ=255) cTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCa < 7:81232/138‑1 (MQ=255) cTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCa > 8:81232/1‑138 (MQ=255) cTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGa > 8:29793/1‑149 (MQ=255) cTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGa > 7:87704/1‑149 (MQ=255) aaGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCa > 5:200840/1‑126 (MQ=255) aaGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCa < 6:200840/126‑1 (MQ=255) gTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAg > 7:219945/1‑149 (MQ=255) gTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAg < 5:302981/149‑1 (MQ=255) gTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGCCGTACAGCATGCCCCAGGGCGTGAAAATTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGCCTTTTTCAGGTGCGGGGAAATGCAACCCAGGATTACAGGATGCTCAg > 5:292423/1‑149 (MQ=255) ttGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGc < 7:29793/149‑1 (MQ=255) tAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGTCTTACAGGATGCTCAGCGGGTAc < 6:74093/149‑1 (MQ=255) tAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTAc > 1:116039/1‑149 (MQ=255) ccGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCAc > 4:239390/1‑149 (MQ=255) cGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCa < 1:144504/126‑1 (MQ=255) cGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCa > 2:144504/1‑126 (MQ=255) gggAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTtc > 6:337954/1‑149 (MQ=255) ggAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTtcg < 3:239390/149‑1 (MQ=255) gAAACGAAGGCGTACATGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTtcgt < 8:71185/149‑1 (MQ=255) gAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTtcgt < 4:149031/149‑1 (MQ=255) aCGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGtcga > 2:119543/1‑149 (MQ=255) cGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGtcgat > 5:370203/1‑149 (MQ=255) ggCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTcgatcgat < 3:312027/149‑1 (MQ=255) ggCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCAAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGtcgatcga < 8:87704/148‑1 (MQ=255) gCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATg > 5:340124/1‑149 (MQ=255) gTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATggg > 7:35613/1‑149 (MQ=255) gTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCAAAGAAAAAACCCGGCGTGATTGCCGGGCTTTTTCAGGTGCTCGGCACTGCAAGCCAGGCTTACAGCATGCTCAGCGGGTACTCCAAGATCAGGCGCAGTTAGTCGATCGATggg > 5:246780/1‑149 (MQ=255) aCAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATgggg > 5:53833/1‑148 (MQ=255) cAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGat > 1:307615/1‑148 (MQ=255) cccAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATggg < 8:54329/138‑1 (MQ=255) cccAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATggg > 7:54329/1‑138 (MQ=255) ccAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCTGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCgtag > 4:51932/1‑146 (MQ=255) ccAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCgtag > 3:50618/1‑146 (MQ=255) ccAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCACGCGCAGTTCGTCGCTCGATGGGGAATCgtag > 5:302624/1‑146 (MQ=255) ccAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCAACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCgtag > 7:219497/1‑146 (MQ=255) gggCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGaca < 6:53833/149‑1 (MQ=255) gctGACAAGTGTCACGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGacac > 7:124502/3‑148 (MQ=255) gTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCAt > 3:116398/1‑149 (MQ=255) gACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCg > 7:79452/1‑149 (MQ=255) acTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGgaa < 2:269468/149‑1 (MQ=255) acTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGgaa < 5:173958/149‑1 (MQ=255) a‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATca > 1:124816/1‑123 (MQ=255) a‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATca < 2:124816/124‑2 (MQ=255) a‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACgg < 8:219945/148‑1 (MQ=255) a‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGt < 5:188310/149‑1 (MQ=255) cgCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGt < 8:124502/148‑1 (MQ=255) gcaaaGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTa < 6:292423/146‑1 (MQ=255) gCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACgg > 1:383348/1‑147 (MQ=255) gCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTa < 6:29988/149‑1 (MQ=255) cAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGt > 3:89265/1‑146 (MQ=255) cAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGt < 4:89265/146‑1 (MQ=255) cAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAgg > 7:197218/1‑149 (MQ=255) cAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAgg < 1:119543/149‑1 (MQ=255) ctgAAAAAGCCCGGCAATCACGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGt > 4:134959/3‑149 (MQ=255) ctgAAAAAGCCCGGCAATCACGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGt > 5:144035/3‑149 (MQ=255) aaGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACg < 5:52942/143‑1 (MQ=255) aaGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACg > 6:52942/1‑143 (MQ=255) aaGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGAAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGAAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGt > 2:73756/1‑149 (MQ=255) aGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGgcg < 8:334818/94‑1 (MQ=255) aGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGgcg > 7:334818/1‑94 (MQ=255) gAAAAAGCCCGGCAATCACGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTgg > 8:361369/1‑149 (MQ=255) aaaaGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCTGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGc < 3:51932/148‑1 (MQ=255) aaaaGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGcc < 3:331364/149‑1 (MQ=255) aaaaGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGcc < 1:366508/149‑1 (MQ=255) aaGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGCCt > 6:255685/1‑148 (MQ=255) ccGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGCCTGacg > 7:242266/1‑148 (MQ=255) gCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGCCTGacgcacg > 4:208466/1‑149 (MQ=255) | GGGTGGCGAGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCA‑GCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGCCTGACGCACG > NC_002947/1385000‑1385293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |