| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 162,282 | A→T | 13.6% | intergenic (‑316/+58) | PP_0153 ← / ← scpC | hypothetical protein/propionyl‑CoA:succinate CoA transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 162,282 | 0 | A | T | 13.6% | 226.0 / 24.0 | 88 | intergenic (‑316/+58) | PP_0153/scpC | hypothetical protein/propionyl‑CoA:succinate CoA transferase |
| Reads supporting (aligned to +/- strand): ref base A (40/36); new base T (8/4); total (48/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 | |||||||||||
CACTTATTTGGTGCGTTTTGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATGGCCGCCACG > NC_002947/162135‑162426 | cACTTATTTGGTGCGTTTTGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAg > 2:325179/1‑149 (MQ=255) aCTTATTTGGTGCGTTTTGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGc > 4:277794/1‑149 (MQ=255) aCTTATTTGGTGAGTTTTGATTCGAAGTAGGGGATTTGTCAGTCGGGAAGGTGTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCGTTCGCGGGCAAGc < 3:275395/149‑1 (MQ=255) ggTGCGTTTTGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCcgcg > 8:180236/1‑146 (MQ=255) ggTGCGTTTTGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGaa < 5:223134/148‑1 (MQ=255) ggTGCGTTTTGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGaa < 3:317085/148‑1 (MQ=255) tGCGTTTTGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGGTTGACTGTTATGG‑CCCATTCGCGGGCTTGCCCGCGaatgg < 1:288879/149‑4 (MQ=255) ctttttGATTCGCAGAAGGGGATTTGTGAGTAGGGAAGGTCTGAAAGAACCAGCAGAGTAGTACAGATTTTGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCTTGCCCGCGaatgggc < 8:331333/147‑6 (MQ=255) cGTTTTGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCTTGCCCGCGaatgggc < 6:77809/149‑6 (MQ=255) ttttGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCg > 5:297924/1‑149 (MQ=255) ttttGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCg > 3:290228/1‑149 (MQ=255) aTTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAAc < 7:331351/148‑1 (MQ=255) gaagaaGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCg > 6:252941/1‑148 (MQ=255) aagaagGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCgg > 2:37915/1‑148 (MQ=255) agaagGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCgg > 6:224557/1‑147 (MQ=255) agaagGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGaa < 6:297924/149‑1 (MQ=255) gaagGGGATTTGTCAGTCGGGAAGGTCTGAAAAAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCGAGCCCGCGAAGAGGCCGGAACAGCGGAAg > 1:48098/1‑149 (MQ=255) aagGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGc < 7:29723/149‑1 (MQ=255) ggggATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑ACCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAg > 2:190386/1‑149 (MQ=255) ggctttGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGGGGCGTAGTGCTAGCAGGGTTTGACTGTTATGGCCCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAgg < 1:279581/146‑1 (MQ=255) ggATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAggg > 4:77726/1‑149 (MQ=255) aGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTc > 5:255023/1‑149 (MQ=255) gTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTcc > 5:335302/1‑149 (MQ=255) gggAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGt < 5:252941/148‑1 (MQ=255) gggAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CACATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGgccgcc < 5:308996/141‑1 (MQ=255) gggAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CACATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGgccgcc > 6:308996/1‑141 (MQ=255) ggAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTAc > 6:352823/1‑149 (MQ=255) gAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTAc > 2:267411/1‑148 (MQ=255) tCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGCAAGCAGGGCCGCCGTTCCGTACCAC‑ATc > 4:166487/1‑149 (MQ=255) gAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCg > 3:37267/1‑148 (MQ=255) aaaGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCg < 4:290228/147‑1 (MQ=255) aGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGAt > 4:21394/1‑148 (MQ=255) aGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATc < 7:353338/149‑1 (MQ=255) aGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTgg < 5:224557/149‑1 (MQ=255) acaGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTGTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCATCTGGCCa < 5:165102/149‑1 (MQ=255) agtaCAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCAt < 3:3851/148‑1 (MQ=255) taCAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATgcg > 5:315611/1‑149 (MQ=255) aCAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGa < 7:141154/130‑1 (MQ=255) aCAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGa > 8:141154/1‑130 (MQ=255) aTTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATc < 6:282548/122‑1 (MQ=255) aTTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATc > 5:282548/1‑122 (MQ=255) aTTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCgg > 4:45335/1‑149 (MQ=255) aTTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCgg < 7:180236/149‑1 (MQ=255) tATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGt > 7:1884/1‑112 (MQ=255) tATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGt < 8:1884/112‑1 (MQ=255) aTGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGtt < 1:37915/148‑1 (MQ=255) tgctAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTttcttc > 2:24782/1‑149 (MQ=255) ctAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGTATGCGCCCGGTTTCTTCCa < 2:353692/149‑1 (MQ=255) ctAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGTATGCGCCCGGTTTCTTCCa < 2:358405/149‑1 (MQ=255) ctAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCa < 3:9790/149‑1 (MQ=255) gtagAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGt > 7:109468/1‑149 (MQ=255) agGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTc > 4:198155/1‑149 (MQ=255) gggTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGt < 2:160644/149‑1 (MQ=255) gggTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGt < 6:335302/149‑1 (MQ=255) ggTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTg > 5:374405/1‑149 (MQ=255) tAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTc < 3:45335/149‑1 (MQ=255) gTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCa < 6:255023/148‑1 (MQ=255) gTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAg < 3:77726/149‑1 (MQ=255) tGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAgg > 5:121955/1‑149 (MQ=255) aaGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTATCGTGCCAGCTCAGGGCTTc < 3:166487/148‑1 (MQ=255) ttGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTc < 1:344569/142‑1 (MQ=255) ttGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTc > 2:344569/1‑142 (MQ=255) gcTGTTCCGG‑CCTCTTCGCGGGCTTGCCCGCGAATGGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGAtg > 7:116332/2‑149 (MQ=38) cTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGAtgt > 8:293129/1‑149 (MQ=255) tGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGAtgtg > 6:123850/1‑149 (MQ=255) tGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGAACAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGAtgtg > 2:101886/1‑149 (MQ=255) ttATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCg < 3:277794/149‑1 (MQ=255) tATGG‑CCCATTCGCGGGCAAGCCCTCTAAGAGGCCGTAACAGCGGAAGCATGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCg < 8:109468/148‑1 (MQ=255) g‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCATGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGt < 3:21394/148‑1 (MQ=255) g‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAg < 7:368422/124‑1 (MQ=255) g‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAg > 8:368422/1‑124 (MQ=255) g‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTa > 8:145378/1‑149 (MQ=255) gcctcttCGCGGGCTTGCCCGCGAATGGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTa > 5:308197/6‑149 (MQ=255) cccATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTAGGACAATCCGGGTAACCTGGCCCCCATGCGCCCGGTTTGTTGCAGGTTTTGGTGCCCGGGAAGGGCTTCGGGCAGGTTTTGGGGGGtt > 1:309866/1‑148 (MQ=255) ctcttCGCGGGCTTGCCCGCGAAGAGGCCCGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGCATTCTTCCACGTATTCGTGCCAGCTCAGTCCTTCTCGCAGGATGTGAGGGGTATg > 4:286487/4‑149 (MQ=255) ccATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATg > 5:198950/1‑149 (MQ=255) ccATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATg < 1:157609/149‑1 (MQ=255) tcttCGCGGGCTTGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATgg > 5:285274/3‑149 (MQ=255) tcttCGCGGGCTTGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATgg > 3:134021/3‑149 (MQ=255) aTTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATGgc < 5:162971/149‑1 (MQ=255) aTTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATGgc < 7:145378/149‑1 (MQ=255) ttCGCGGGCTTGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCa < 7:361706/130‑1 (MQ=255) ttCGCGGGCTTGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCa > 8:361706/1‑130 (MQ=255) tCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATGgccg > 4:216881/1‑149 (MQ=255) gcgGGCTTGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATGgccgc > 6:378605/1‑148 (MQ=255) gcgGGCTTGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATGgccgc > 5:376888/1‑148 (MQ=255) gcgGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATGgccgc > 8:42811/1‑148 (MQ=255) ggCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGTATGTGCGGGGTATGGCCGCCACg > 6:211513/1‑149 (MQ=255) aaGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATg > 1:349338/1‑137 (MQ=255) aaGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATg < 2:349338/137‑1 (MQ=255) | CACTTATTTGGTGCGTTTTGATTCGAAGAAGGGGATTTGTCAGTCGGGAAGGTCTGAAAGAACCAGCACAGTAGTACAGATTATGCTGCTAGTAGAGGGGTGGCGTAGTGATAGAAGGGTTTGACTGTTATGG‑CCCATTCGCGGGCAAGCCCGCGAAGAGGCCGGAACAGCGGAAGCAGGGCCGCCGTTCCGTACCAC‑ATCCGGATCAGCTGGCCAGCATGCGCCCGGTTTCTTCCAGGTTTTCGTGCCAGCTCAGGGCTTCGCGCAGGATGTGCGGGGTATGGCCGCCACG > NC_002947/162135‑162426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |