| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,582,140 | T→G | 7.3% | K139Q (AAA→CAA) | ttgA ← | efflux pump periplasmic linker TtgA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,582,140 | 0 | T | G | 7.3% | 241.8 / 9.7 | 82 | K139Q (AAA→CAA) | ttgA | efflux pump periplasmic linker TtgA |
| Reads supporting (aligned to +/- strand): ref base T (33/43); new base G (3/3); total (36/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.48e-01 | |||||||||||
TGGCCATGGCGTCGGTCTGGCCATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAGGGTGGCTTCGTACACGGCAGGGTCGATCTGATAC > NC_002947/1581993‑1582285 | tggCCATGGCGTCGGTCTGGCCATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTGTTGAGCGAAGCCTCAGCCTGCAATCGTTTg < 1:31530/149‑1 (MQ=255)tggCCATGGCGTCGGTCTGGCCATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTg < 7:221602/149‑1 (MQ=255) gCCATGGCGTCGGTCTGGCCATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGc < 7:178299/149‑1 (MQ=255) cATGGCGTCGGTCTGGCCATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCAt > 4:42532/1‑149 (MQ=255) tGGCGTCGGTCTGGCCATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTg < 2:139098/149‑1 (MQ=255) gTCGGTCTGGCCATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGcgt > 2:308637/1‑149 (MQ=255) cGGTCTGGCCATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGcgtcg < 2:391645/149‑1 (MQ=255) aggCCATAGCTCACAACTGCACCCTCGGTCAACGAAGAGCGACCGATACGGCCGCTGATTCGCTCCAGAACCTTGGAGTAGCGCAGCACGATCACTGCGCTCTAGAGCGAACCCACAGACTGCAAACGTTTCGCATATGCGTCGTCATa > 4:304387/2‑149 (MQ=255) gCCATTGCTCACCAGTGCACCGTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTa < 3:149363/147‑1 (MQ=255) ccATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTc > 3:2802/1‑149 (MQ=255) ccATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTc > 3:34696/1‑149 (MQ=255) cTCACCAGTGCACCCTCTGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTATCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGtt < 5:175349/148‑1 (MQ=255) cTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGtt‑‑t > 5:18328/1‑149 (MQ=255) cTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGtt‑‑t > 7:171772/1‑149 (MQ=255) cTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGtt < 5:94647/148‑1 (MQ=255) tCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑Tg > 8:45214/1‑149 (MQ=255) aCCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTGGGCAtt > 5:3008/1‑125 (MQ=255) aCCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTGGGCAtt < 6:3008/125‑1 (MQ=255) aCCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTGGGCAtt > 3:123058/1‑125 (MQ=255) aCCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTGGGCAtt < 4:123058/125‑1 (MQ=255) cAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGgaga > 3:277820/1‑149 (MQ=255) aGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGAc < 5:314673/149‑1 (MQ=255) aCCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCt < 4:34696/149‑1 (MQ=255) cccTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACg > 7:97309/1‑144 (MQ=255) cccTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACg < 8:97309/144‑1 (MQ=255) ccTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGAGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGt > 7:176427/1‑149 (MQ=255) ggTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCg < 7:45214/148‑1 (MQ=255) ggTGAACGAAGAGCGACCGATACGGCCGCCGATTCGCGCCAGAACCTTGGTGTAGCGCAGGGCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTc < 8:187534/147‑1 (MQ=255) aaCGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAAt > 3:248201/1‑149 (MQ=255) aCGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAAt > 8:356765/1‑148 (MQ=255) gAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAg > 6:66973/1‑149 (MQ=255) agagCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGAc > 4:117991/1‑129 (MQ=255) agagCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGAc < 3:117991/129‑1 (MQ=255) agagCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGtt < 6:90122/149‑1 (MQ=255) agagCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGtt > 1:313473/1‑149 (MQ=255) agagCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGtt > 5:66757/1‑149 (MQ=255) gagCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTg < 1:308637/149‑1 (MQ=255) agCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGc > 6:168999/1‑149 (MQ=255) agCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGc < 6:18328/149‑1 (MQ=255) cggATACGGCCGCTGATTTGCGCCAGATCCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGTAGACGGCCTGTTc < 6:27678/129‑1 (MQ=255) ccGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTTCGCTCTTGAGCCAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGACACGGCCTGTTc > 5:27678/1‑131 (MQ=255) tACGGGCGCTTATTGGCGGCAGAACCTTTGTTTATCGCATGTCGATCTGTGCGCTCTTGAGGGAAGCCTCATCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGt < 7:252705/110‑1 (MQ=255) tACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCATGt > 8:252705/1‑110 (MQ=255) ggCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTTCAATCGTTTGTCATTGGCTTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCg < 5:272837/149‑1 (MQ=255) gCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGCGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCgg > 1:76537/1‑149 (MQ=255) cgccTGATTGCCGCCAGAACCTTGCTGTACCGCAGGTCGATCTGTGCGCTCTTGTGCGAAGCCTCAGCCTGCAATCGTTTGCCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGCCGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGc < 4:261895/146‑1 (MQ=255) gCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGc > 3:150326/1‑147 (MQ=255) gCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCa < 4:277820/149‑1 (MQ=255) cTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAg < 4:2802/149‑1 (MQ=255) ggCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGc < 2:313473/148‑1 (MQ=255) gcgcCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCgt < 3:42532/149‑1 (MQ=255) gcgcCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCgt > 5:238828/1‑149 (MQ=255) gcgcCAGAACCTTCGTGTATCGCAGGTCGATCAGTGCGCTCGTGAGCGAAGCCTCAGCCTGCAAGCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGGCAATCAGTTGCTTGTAACGTTCCGCCAGTGAGCgt < 2:137094/149‑1 (MQ=255) aGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCTGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGc < 8:247802/149‑1 (MQ=255) aGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGc < 5:66973/149‑1 (MQ=255) gAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGcc < 4:248201/149‑1 (MQ=255) aCCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCcag < 8:171772/149‑1 (MQ=255) ccTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCcag > 4:31244/1‑148 (MQ=255) cTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCcag > 1:181336/1‑147 (MQ=255) cgcAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCtt < 2:181336/149‑1 (MQ=255) gcAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTg < 6:66757/149‑1 (MQ=255) aGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGc < 5:168999/149‑1 (MQ=255) ggTCGATCTGTTCGCTCTTGAGCGAAGCCTCAGCCTGCAAGCGTTTGGCATTGGCGTCGTCGTATTCGTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCa < 2:200044/149‑1 (MQ=255) gTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTc < 5:315981/87‑1 (MQ=255) gTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTc > 6:315981/1‑87 (MQ=255) gTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTGGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCAt > 1:279587/1‑149 (MQ=255) tCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTTAGGGGAAACCGCCTTTTAGTAAAAAAATTGGTTTTAAAGTTAGGCCAATTATCGTGTATGCAGCATGTTTGCCTTGGCAtttg > 1:122909/1‑147 (MQ=255) tCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTTAGAGGAGACGGCCAGTTAGTGAATCAGTTGGTTGTTACGTTAGGCCAGTGATCGTGTAGCCAGCAGGTTTGCCTTGGCCtttg > 1:117780/1‑147 (MQ=255) gtgCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAg < 7:356765/148‑1 (MQ=255) tgCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCCTTCGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGc < 6:374430/144‑1 (MQ=255) tgCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGc < 2:76537/144‑1 (MQ=255) tgCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAgg > 5:82951/1‑148 (MQ=255) tgCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAgg < 6:82951/148‑1 (MQ=255) tgCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTGGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAgg < 2:279587/148‑1 (MQ=255) tctTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTg < 4:183417/131‑1 (MQ=255) tctTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTg > 3:183417/1‑131 (MQ=255) tctTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAGGGTGGCt > 4:370234/1‑149 (MQ=255) aaGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAggg < 2:207784/135‑1 (MQ=255) aaGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAggg > 1:207784/1‑135 (MQ=255) cAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAGGGTGGCTTCGTACACGGCAGGGTCGATc < 3:370234/148‑1 (MQ=255) cAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAGGGTGGCTTCGTACACGGCAGGGTCGATCt < 3:31244/149‑1 (MQ=255) aaTCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAGGGTGGCTTCGTACACGGCAGGGTCGATCt > 7:302175/1‑148 (MQ=255) tttGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAGGGTGGCTTCGTAAACGGCAGGGTCGATCTGAGAc > 4:258498/1‑148 (MQ=255) tGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAGGGTGGCTTCGTACACGGCAGGGTc > 7:316286/1‑136 (MQ=255) tGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAGGGTGGCTTCGTACACGGCAGGGTc < 8:316286/136‑1 (MQ=255) | TGGCCATGGCGTCGGTCTGGCCATTGCTCACCAGTGCACCCTCGGTGAACGAAGAGCGACCGATACGGCCGCTGATTGGCGCCAGAACCTTGGTGTAGCGCAGGTCGATCTGTGCGCTCTTGAGCGAAGCCTCAGCCTGCAATCGTTTGGCATTGGCGTCGTCGTATTCCTGTT‑‑TGGAGACGGCCTGTTCGTCAATCAGTTGCTTGTAACGTTCGGCCAGTGAGCGTGTAGCCAGCAGGTTGGCCTTGGCATTGGCCAGGGTGGCTTCGTACACGGCAGGGTCGATCTGATAC > NC_002947/1581993‑1582285 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |