| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,559 | C→A | 28.8% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,559 | 0 | C | A | 28.8% | 145.3 / 57.1 | 83 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (31/28); new base A (11/13); total (42/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.58e-01 | |||||||||||
CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAC > NC_002947/195411‑195706 | cccAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCAcc > 1:141227/1‑149 (MQ=32) aGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCAACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACcggc > 8:204841/1‑149 (MQ=17) accCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑Ct < 7:52801/149‑1 (MQ=39) gTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGACACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CAGcccc > 8:271109/1‑149 (MQ=255) aaCGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGa > 4:98179/1‑148 (MQ=39) aGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGAcc < 2:206680/149‑1 (MQ=255) gTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGAcccc > 6:70735/1‑149 (MQ=255) atcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACACCGGc > 1:361657/1‑149 (MQ=255) tcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCt > 4:376379/1‑149 (MQ=40) tGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGa > 7:46047/1‑149 (MQ=38) tGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGa > 2:218393/1‑149 (MQ=38) aaGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGCCCCCGAATCCGACCCCGGCTCAGACCAc > 7:106921/1‑148 (MQ=37) aGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAAt > 5:267021/1‑127 (MQ=38) aGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAAt < 6:267021/127‑1 (MQ=38) gCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGAt < 7:204841/149‑1 (MQ=37) cGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCa < 3:98179/149‑1 (MQ=37) ggCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 1:208491/149‑1 (MQ=37) gCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCa < 2:73757/141‑1 (MQ=37) gCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCa > 1:73757/1‑141 (MQ=37) gCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc > 7:47211/1‑149 (MQ=37) aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCTAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACg > 7:129191/1‑148 (MQ=37) aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGa < 2:141227/149‑1 (MQ=37) cAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 8:47211/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGCCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc > 5:144257/1‑149 (MQ=21) gCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcacc < 8:218687/149‑1 (MQ=38) gATTTCACGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcaccaccac < 7:271109/149‑1 (MQ=255) tttCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACcg > 8:53709/1‑149 (MQ=39) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcc < 5:70735/149‑1 (MQ=39) aCCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCt < 8:46047/149‑1 (MQ=39) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCACACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACg < 1:278545/149‑1 (MQ=255) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGc > 2:337315/1‑149 (MQ=17) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGc < 6:185398/149‑1 (MQ=17) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCg > 3:301714/1‑149 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGc > 6:386127/1‑140 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGc < 5:386127/140‑1 (MQ=17) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg < 5:384286/149‑1 (MQ=17) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGt > 4:292585/1‑149 (MQ=12) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 7:239981/1‑149 (MQ=37) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATTCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 1:210839/1‑149 (MQ=37) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 7:2566/1‑149 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 7:318106/149‑1 (MQ=37) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc > 2:134668/1‑149 (MQ=37) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc < 7:157019/149‑1 (MQ=17) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCAGACGGCGAGCCCGTCGGTCACCGAAggc < 1:224440/149‑1 (MQ=12) ttCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 8:129191/149‑1 (MQ=37) gACCGTCAGCGTCACCCTCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 7:365105/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 2:301090/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 8:2566/148‑1 (MQ=37) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 8:187068/149‑1 (MQ=17) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:327757/1‑149 (MQ=17) aCCGACAGCGTCACCAACGAGAACGCCACAGGCCGTAATATCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACCATCAACGACTCCGTCGACACCACTACCGCGCCCCTGACGGCTACCCCGACGCTCACCCAACGCCGCGt > 5:301904/1‑149 (MQ=11) ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 3:358442/1‑148 (MQ=37) cGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAGCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:284056/1‑148 (MQ=255) cGTCAGCGTCACCATCGAGAACGCCACACGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa > 1:219305/1‑149 (MQ=12) gTCAGCGTCACGATCGTGAACGCCACAGGGGGTTATTTCGAGCAA‑CTGTGCCCTAATCCGACCCCGGCTCAGACCACGTTCATCGACTCGGTCGAGACCACTACCGCGACCCTGACGGCGAGCGGGTCGGTCAGCGAAGGCGGCGTGAt < 6:301904/149‑1 (MQ=11) gTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 3:376379/149‑1 (MQ=39) gTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 6:245568/1‑149 (MQ=39) tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 4:323399/1‑148 (MQ=39) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 4:138782/1‑148 (MQ=17) gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 2:129386/1‑149 (MQ=39) cACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca > 1:191187/1‑149 (MQ=39) tagaggagaACTCCACAGTCGGTAATTTCTAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 4:304903/144‑1 (MQ=11) ccATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 7:53709/149‑1 (MQ=39) ccATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 3:343684/1‑149 (MQ=39) ccATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATAACTTACAcc < 2:237023/149‑1 (MQ=255) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 3:18910/1‑149 (MQ=17) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa > 4:83534/1‑72 (MQ=34) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 3:83534/72‑1 (MQ=34) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg < 4:301714/149‑1 (MQ=17) aTCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 2:260970/1‑149 (MQ=39) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGCCGACACCACTACCGCGACCCt < 3:349577/101‑1 (MQ=255) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGCCGACACCACTACCGCGACCCt > 4:349577/1‑101 (MQ=255) gagaACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGa > 8:57358/1‑106 (MQ=40) gagaACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGa < 7:57358/106‑1 (MQ=40) gagaACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGACACCGAAGGCGGCGTGATCACTTACACCGTGAc > 1:383928/1‑149 (MQ=255) gagaACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGCCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc > 7:61877/1‑149 (MQ=12) aaCGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:284056/149‑1 (MQ=39) aCGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:327757/148‑1 (MQ=17) cGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 8:239981/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:134668/149‑1 (MQ=39) cGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:273701/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 5:140088/149‑1 (MQ=17) cACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa > 6:136091/1‑115 (MQ=39) cACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 5:136091/115‑1 (MQ=39) cACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 2:12758/1‑148 (MQ=39) cggcggTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc < 8:156459/148‑1 (MQ=38) cggcggTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc > 7:156459/1‑148 (MQ=38) | CCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAC > NC_002947/195411‑195706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |