| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,628 | C→T | 9.2% | D378D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,628 | 0 | C | T | 9.2% | 384.6 / 21.1 | 142 | D378D (GAC→GAT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (66/62); new base T (4/9); total (70/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.52e-01 | |||||||||||
Only 100 of 146 total aligned reads displayed.
GCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACC > NC_002947/195483‑195775 | gCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcacc < 8:218687/149‑1 (MQ=38) gATTTCACGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcaccaccac < 7:271109/149‑1 (MQ=255) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcc < 5:70735/149‑1 (MQ=39) aCCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑Ct < 8:46047/149‑1 (MQ=39) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCACACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACg < 1:278545/149‑1 (MQ=255) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGc > 2:337315/1‑149 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGc < 5:386127/140‑1 (MQ=17) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCg < 5:384286/149‑1 (MQ=17) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGt > 4:292585/1‑149 (MQ=12) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCAc > 7:239981/1‑149 (MQ=37) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATTCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCAcc > 1:210839/1‑149 (MQ=37) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCAcc > 7:2566/1‑149 (MQ=37) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAggc > 2:134668/1‑149 (MQ=37) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAggc < 7:157019/149‑1 (MQ=17) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CAGACGGCGAGCCCGTCGGTCACCGAAggc < 1:224440/149‑1 (MQ=12) ttCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAggcg < 8:129191/149‑1 (MQ=37) gACCGTCAGCGTCACCCTCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 7:365105/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 2:301090/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 8:2566/148‑1 (MQ=37) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:327757/1‑149 (MQ=17) aCCGACAGCGTCACCAACGAGAACGCCACAGGCCGTAATATCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACCATCAACGACTCCGTCGACACCACTACCGCGCCC‑CTGACGGCTACCCCGACGCTCACCCAACGCCGCGt > 5:301904/1‑149 (MQ=11) ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 3:358442/1‑148 (MQ=37) cGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAGCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:284056/1‑148 (MQ=255) cGTCAGCGTCACCATCGAGAACGCCACACGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa > 1:219305/1‑149 (MQ=12) gTCAGCGTCACGATCGTGAACGCCACAGGGGGTTATTTCGAGCAA‑CTGTGCCCTAATCCGACCCCGGCTCAGACCACGTTCATCGACTCGGTCGAGACCACTACCGCGACC‑CTGACGGCGAGCGGGTCGGTCAGCGAAGGCGGCGTGAt < 6:301904/149‑1 (MQ=11) gTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 6:245568/1‑149 (MQ=39) tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 4:323399/1‑148 (MQ=39) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 4:138782/1‑148 (MQ=17) gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 2:129386/1‑149 (MQ=39) cACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca > 1:191187/1‑149 (MQ=39) tagaggagaACTCCACAGTCGGTAATTTCTAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 4:304903/144‑1 (MQ=11) ccATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 7:53709/149‑1 (MQ=39) ccATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 3:343684/1‑149 (MQ=39) ccATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATAACTTACAcc < 2:237023/149‑1 (MQ=255) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 3:18910/1‑149 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGCCGACACCACTACCGCGACC‑Ct > 4:349577/1‑101 (MQ=255) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGCCGACACCACTACCGCGACC‑Ct < 3:349577/101‑1 (MQ=255) gagaACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGa > 8:57358/1‑106 (MQ=40) gagaACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGACACCGAAGGCGGCGTGATCACTTACACCGTGAc > 1:383928/1‑149 (MQ=255) gagaACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGCCC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc > 7:61877/1‑149 (MQ=12) aaCGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:284056/149‑1 (MQ=39) aCGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:327757/148‑1 (MQ=17) cGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 8:239981/149‑1 (MQ=39) cACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGaa < 5:136091/115‑1 (MQ=39) cACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGaa > 6:136091/1‑115 (MQ=39) cggcggTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc > 7:156459/1‑148 (MQ=38) gcggTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt > 7:267738/1‑149 (MQ=21) ggTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCATCGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 8:65028/133‑1 (MQ=37) tAATTTCGAGCAA‑CTGACCCCGAATCCGCCCCCGGAGCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 3:203404/149‑1 (MQ=11) tCGACCAA‑CTGACCCAGAATCCGACCCAGGCTCAGACGACGATCAACGACTCTGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCTGTCACCGAAGGCGGCGTGATCACTTACAGCGTGACCCTGAGCAACCCTGCCCAGAc < 3:239360/148‑1 (MQ=11) gAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 8:149154/148‑1 (MQ=17) gAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 3:323399/148‑1 (MQ=39) cAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt < 2:383928/149‑1 (MQ=39) aa‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 6:153573/102‑1 (MQ=17) tGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 4:216178/135‑1 (MQ=21) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCg > 6:335624/1‑149 (MQ=9) acaccGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGGCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGt < 8:180683/146‑1 (MQ=11) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGt < 4:381542/149‑1 (MQ=12) aCCCCGAAACCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt > 2:229494/1‑149 (MQ=255) ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt > 5:28061/1‑148 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGCCACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 3:19329/1‑148 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa > 1:139393/1‑149 (MQ=12) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAg < 5:91942/89‑1 (MQ=38) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAg > 6:91942/1‑89 (MQ=38) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 1:226842/1‑148 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 3:185966/1‑148 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa > 5:202524/1‑149 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg < 8:307082/119‑1 (MQ=39) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 7:307082/1‑119 (MQ=39) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa > 8:159477/1‑149 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 5:245568/149‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 1:260970/149‑1 (MQ=255) aaTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 8:17413/121‑1 (MQ=14) aaTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc > 4:35106/1‑145 (MQ=2) cGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTc < 3:292585/148‑1 (MQ=255) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt < 3:46180/132‑1 (MQ=37) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt > 4:46180/1‑132 (MQ=37) gACCCCGGCTCAGACAACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 6:396668/1‑148 (MQ=255) cccGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg > 1:130252/1‑149 (MQ=40) ccGGCTCAGACCACGCTCAACGACTCGGTCGACCCCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACgg > 7:312863/1‑149 (MQ=255) gcccacaCCACGATCAACGACGCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCa < 8:312863/143‑1 (MQ=255) aGACCACGATCAACGACTCGGTAGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc > 7:245807/1‑143 (MQ=255) aCCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt < 8:106921/149‑1 (MQ=39) ccACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc > 2:45624/1‑122 (MQ=35) ccACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc < 1:45624/122‑1 (MQ=35) ccACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt < 6:144257/148‑1 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCACTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCATGCCCAGACGCCGGAAACCGTGAACATGTCCAACGGCCAAACGAt > 1:69308/1‑148 (MQ=14) cACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 3:356303/1‑149 (MQ=255) gATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 8:322214/1‑149 (MQ=39) tCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 1:208528/1‑149 (MQ=255) aaCGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa > 2:105034/1‑136 (MQ=40) aaCGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa < 1:105034/136‑1 (MQ=40) aCGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGCGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTg > 7:104850/1‑147 (MQ=255) cTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg < 2:226202/112‑1 (MQ=25) cTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg > 8:371267/1‑149 (MQ=255) cTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:210839/149‑1 (MQ=39) cTCGGACGACACCACCACCGCGCCC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGACCACTTACACCGTGACCCTGAGCATCCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:297879/149‑1 (MQ=255) tCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAc > 6:245415/1‑107 (MQ=17) ggTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 6:7334/1‑148 (MQ=39) acacCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc < 1:129386/149‑1 (MQ=39) | GCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACC > NC_002947/195483‑195775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |