Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,315,665 C→G 10.2% G96A (GGC→GCC)  PP_2037 ← aldolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,315,6650CG10.2% 133.8 / 7.3 49G96A (GGC→GCC) PP_2037aldolase
Reads supporting (aligned to +/- strand):  ref base C (20/24);  new base G (3/2);  total (23/26)
Fisher's exact test for biased strand distribution p-value = 6.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.06e-01

GGGGCACAGGTCCATGTGCGAGATGGCCAGCGGAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGCAGTGATCTGCCCGGCCAGGCCAGAGT  >  NC_002947/2315517‑2315809
                                                                                                                                                     |                                                                                                                                                 
ggggCACAGGTCCATGTGCGAGATGGCCAGCGGAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGgccatgc                                                                                                                                                   >  2:92344/1‑149 (MQ=255)
    cacaGGTCCATGTGCGAGATGGCCAGCGGAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGccatgccatg                                                                                                                                               <  4:251265/149‑1 (MQ=255)
         ggccATGTGCGAGATGGCCAGCGGAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCtt                                                                                                                                          <  8:181425/147‑1 (MQ=255)
          tCCATGTGCGAGATGGCCAGCGGAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGGCATGGccaac                                                                                                                                         <  4:147961/149‑4 (MQ=255)
           ccATGTGCGAGATGGCCAGCGGAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTgc                                                                                                                                        <  7:154747/149‑1 (MQ=255)
            cATGTGCGAGATGGCCAGCGGAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGGCATGGccaaccc                                                                                                                                       <  2:414/149‑6 (MQ=255)
               gtgCGAGATGGCCAGCGGAACTTCCAGCATCGACAAGACGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTgc                                                                                                                                        >  1:267649/1‑145 (MQ=255)
               gtgCGAGATGGCCAGCGGAACTTCCAGCATCGACAAGACGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTgc                                                                                                                                        <  2:267649/145‑1 (MQ=255)
                             gCGGAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCg                                                                                                                     <  6:27944/149‑1 (MQ=255)
                               ggAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGCTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGt                                                                                                                    <  1:92344/149‑1 (MQ=255)
                                gAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTcc                                                                                                                  >  4:374371/1‑149 (MQ=255)
                                     tgcAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCCGGGCGGCCGCTGTACAGACAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGCACTTGCAGCACCGTCAGGTCTTCGTccaccac                                                                                                             >  5:275488/3‑149 (MQ=255)
                                      ccAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTTGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTccaccac                                                                                                             <  3:61668/148‑1 (MQ=255)
                                      ccAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTccaccac                                                                                                             <  5:34104/148‑1 (MQ=255)
                                        aGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCCACCGTCAGGTCTTCGTccaccacca                                                                                                           <  1:5575/149‑1 (MQ=255)
                                          cATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTccaccaccac                                                                                                          >  1:202083/1‑146 (MQ=255)
                                               aCAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTg                                                                                                   >  2:238604/1‑149 (MQ=255)
                                                   ggcggcGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCt                                                                                                                                           >  6:363463/1‑106 (MQ=255)
                                                   ggcggcGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCt                                                                                                                                           <  5:363463/106‑1 (MQ=255)
                                                    gcggcgCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAgc                                                                                              >  8:285466/1‑149 (MQ=255)
                                                       gcgcTGTGCAGTGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAgcggc                                                                                           >  8:169206/1‑149 (MQ=255)
                                                         gcTGTGCAGCGGGTGGGTGTGGATGATACAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAgcggcg                                                                                          <  6:375327/148‑1 (MQ=255)
                                                               cAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGAAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTtcgt                                                                                   >  4:379817/1‑149 (MQ=255)
                                                                  cGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTtcgtcg                                                                                 >  5:280039/1‑148 (MQ=255)
                                                                   gggtgggtGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGaa                                                                               <  1:238604/149‑1 (MQ=255)
                                                                         gggtgGCTGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGGCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGaagccaag                                                                         <  4:259514/147‑1 (MQ=255)
                                                                             ggATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGccc                                                                      >  6:91878/1‑148 (MQ=255)
                                                                                  atgCAGTTGACGTCGGGGCGGGCGCGGTTCTGCCAGCTGTGGAAGCTGTTGGGCGGGTTGGCCATGCCATGGCCTTGCAGCACGTTCAGGTCTTCGTCCACCACCAGCAGGTTGGACGCGGCGATTTCGTCGAAGCCAAGCCCCAgtt                                                                 <  6:275488/148‑1 (MQ=255)
                                                                                      aGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTgg                                                            >  6:212953/1‑149 (MQ=255)
                                                                                      aGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTgg                                                            <  7:285466/149‑1 (MQ=255)
                                                                                      aGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTgg                                                            <  1:15420/149‑1 (MQ=255)
                                                                                      aGTTGACGGCGGTGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGTCCGGGTTGGCCATGCCATGGCCTTGGAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTgg                                                            <  7:77008/149‑1 (MQ=255)
                                                                                       gTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTggg                                                           >  2:15624/1‑149 (MQ=255)
                                                                                          gACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGgtg                                                         <  5:212953/148‑1 (MQ=255)
                                                                                             gTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTgtagt                                                     <  5:91878/149‑1 (MQ=255)
                                                                                               cGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAgcgg                                                                                            <  4:186923/108‑1 (MQ=255)
                                                                                               cGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAgcgg                                                                                            >  3:186923/1‑108 (MQ=255)
                                                                                                  ggcgggcgCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTg                                                >  6:208276/1‑149 (MQ=255)
                                                                                                    cgggcgCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGcc                                              <  6:280039/149‑1 (MQ=255)
                                                                                                            gTACAGCCAGCTGTGGAAGCGGTTGGCACGGTTGGCCATGCCATGGAATTGCAGCACCCTCAGGTCTTAGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCAAAGCCCCAGTTGTTGGGTGTATTAGGTGCCAGGCTCCt                                      >  1:222473/1‑149 (MQ=255)
                                                                                                                     gcTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCAcgcg                             <  7:169206/149‑1 (MQ=255)
                                                                                                                           gAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGCAGTg                        <  1:15624/148‑1 (MQ=255)
                                                                                                                                 gTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCTAGCCCCAgttgc                                                               >  8:293993/1‑102 (MQ=255)
                                                                                                                                 gTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGCAGTGATCTGcc                 >  2:328322/1‑149 (MQ=255)
                                                                                                                                     ggCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTACACCACCAGCATGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGAATTGATCTGCCCgg              >  2:120129/1‑149 (MQ=255)
                                                                                                                                      gCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGCAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGCAGTGATCTGCCCggc             >  4:200512/1‑149 (MQ=255)
                                                                                                                                      gCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGCAGTGATCTGCCCggc             <  3:374371/149‑1 (MQ=255)
                                                                                                                                         tgcaaggCCATGGCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGCAGTGATCTGCCCggccag          >  8:141057/6‑149 (MQ=255)
                                                                                                                                         tgcaaggCCATGGCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTAGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGCAGTGATCTGCCCggccag          >  6:266617/6‑149 (MQ=255)
                                                                                                                                         gggTTGGCCATGCCAGGGCCTTGCAGCACCGTCAGGTCTTCGTCAACCACCAGCAGGTTGGAATCGTCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCATGCTCCTGCGCACGCGCAGTGATCTGCCCggccag          <  4:126670/149‑1 (MQ=255)
                                                                                                                                           caaggCCATGGCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGCAGTGAACTGCCCggccaggc        >  1:108884/4‑149 (MQ=255)
                                                                                                                                               gccatgccatGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACgcgc                            >  6:166238/1‑125 (MQ=255)
                                                                                                                                               gccatgccatGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACgcgc                            <  5:166238/125‑1 (MQ=255)
                                                                                                                                                ccatgccatgGCCTTGAAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGCAGTGATCTGCCCGGCCAGGCCagag   <  3:379817/149‑1 (MQ=255)
                                                                                                                                                 catgccatgGCCTTGCAGCACCGTCAGGTCTTCGTCAACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGGGTAGTAGGTGCCAGGCTCCTGAGCACGCGCAGTGATCTGCCCGGCCAGGCCAGAGt  >  4:276058/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
GGGGCACAGGTCCATGTGCGAGATGGCCAGCGGAACTTCCAGCATCGACAAGGCGGCGCTGTGCAGCGGGTGGGTGTGGATGATGCAGTTGACGTCGGGGCGGGCGCGGTACAGCCAGCTGTGGAAGCGGTTGGCCGGGTTGGCCATGCCATGGCCTTGCAGCACCGTCAGGTCTTCGTCCACCACCAGCAGGTTGGAAGCGGCGATTTCGTCGAAGCCAAGCCCCAGTTGTTGGGTGTAGTAGGTGCCAGGCTCCTGCGCACGCGCAGTGATCTGCCCGGCCAGGCCAGAGT  >  NC_002947/2315517‑2315809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: