| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,634 | C→T | 42.3% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,634 | 0 | C | T | 42.3% | 88.1 / 160.7 | 144 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (37/46); new base T (33/28); total (70/74) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 151 total aligned reads displayed.
GATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCA > NC_002947/195488‑195782 | gATTTCACGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcaccaccac < 7:271109/149‑1 (MQ=255) tttCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACcg > 8:53709/1‑149 (MQ=39) aCCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑Ct < 8:46047/149‑1 (MQ=39) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCg > 3:301714/1‑149 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGc < 5:386127/140‑1 (MQ=17) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGt > 4:292585/1‑149 (MQ=12) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCAc > 7:239981/1‑149 (MQ=37) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCAcc > 7:2566/1‑149 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGaa < 7:318106/149‑1 (MQ=37) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAggc > 2:134668/1‑149 (MQ=37) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAggc < 7:157019/149‑1 (MQ=17) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:327757/1‑149 (MQ=17) ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 3:358442/1‑148 (MQ=37) cGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAGCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:284056/1‑148 (MQ=255) cGTCAGCGTCACCATCGAGAACGCCACACGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa > 1:219305/1‑149 (MQ=12) gTCAGCGTCACGATCGTGAACGCCACAGGGGGTTATTTCGAGCAA‑CTGTGCCCTAATCCGACCCCGGCTCAGACCACGTTCATCGACTCGGTCGAGACCACTACCGCGACC‑CTGACGGCGAGCGGGTCGGTCAGCGAAGGCGGCGTGAt < 6:301904/149‑1 (MQ=11) gTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 6:245568/1‑149 (MQ=39) gTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 3:376379/149‑1 (MQ=39) tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 4:323399/1‑148 (MQ=39) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 4:138782/1‑148 (MQ=17) ccATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 7:53709/149‑1 (MQ=39) ccATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATAACTTACAcc < 2:237023/149‑1 (MQ=255) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg < 4:301714/149‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGCCGACACCACTACCGCGACC‑Ct < 3:349577/101‑1 (MQ=255) gagaACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGa < 7:57358/106‑1 (MQ=40) gagaACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGACACCGAAGGCGGCGTGATCACTTACACCGTGAc > 1:383928/1‑149 (MQ=255) aaCGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:284056/149‑1 (MQ=39) aCGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:327757/148‑1 (MQ=17) cGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 8:239981/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:134668/149‑1 (MQ=39) cGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 5:140088/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:273701/149‑1 (MQ=17) cACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 2:12758/1‑148 (MQ=39) cggcggTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc > 7:156459/1‑148 (MQ=38) cggcggTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc < 8:156459/148‑1 (MQ=38) aggcggTAATTTCTAGCAA‑CTGACCCCGAATCCGTCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 7:257203/148‑1 (MQ=255) ggcggTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAccc < 8:117801/149‑1 (MQ=21) gcggTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt > 1:66404/1‑149 (MQ=21) ggTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCATCGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 8:65028/133‑1 (MQ=37) gTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc < 4:343684/149‑1 (MQ=39) tCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc < 8:358156/148‑1 (MQ=21) tCGACCAA‑CTGACCCAGAATCCGACCCAGGCTCAGACGACGATCAACGACTCTGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCTGTCACCGAAGGCGGCGTGATCACTTACAGCGTGACCCTGAGCAACCCTGCCCAGAc < 3:239360/148‑1 (MQ=11) gAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 8:149154/148‑1 (MQ=17) gAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 3:323399/148‑1 (MQ=39) gAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 1:218393/148‑1 (MQ=39) cAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt < 2:383928/149‑1 (MQ=39) aa‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 6:153573/102‑1 (MQ=17) tGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc > 3:216178/1‑135 (MQ=21) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCg > 6:335624/1‑149 (MQ=9) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc < 1:337315/148‑1 (MQ=38) acaccGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGGCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGt < 8:180683/146‑1 (MQ=11) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACTCTGCCCAGACGCCGGTGAcc < 4:174576/147‑1 (MQ=2) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGt < 4:381542/149‑1 (MQ=12) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc < 5:257801/147‑1 (MQ=38) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc < 2:361657/147‑1 (MQ=40) aCCCCGAAACCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt > 2:229494/1‑149 (MQ=255) ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt > 5:28061/1‑148 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGCCACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 3:19329/1‑148 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa > 1:139393/1‑149 (MQ=12) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAg < 5:91942/89‑1 (MQ=38) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAg > 6:91942/1‑89 (MQ=38) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 3:185966/1‑148 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 1:226842/1‑148 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa > 5:202524/1‑149 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg < 8:307082/119‑1 (MQ=39) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc < 3:170858/149‑3 (MQ=2) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 1:260970/149‑1 (MQ=255) aaTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc > 7:17413/1‑121 (MQ=14) aaTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 8:17413/121‑1 (MQ=14) aaTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc > 4:35106/1‑145 (MQ=2) aaTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc < 3:35106/147‑3 (MQ=2) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt > 4:46180/1‑132 (MQ=37) gACCCCGGCTCAGACAACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 6:396668/1‑148 (MQ=255) ccGGCTCAGACCACGCTCAACGACTCGGTCGACCCCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACgg > 7:312863/1‑149 (MQ=255) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc < 8:245807/143‑1 (MQ=37) aGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc > 6:10605/1‑148 (MQ=39) aCCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt < 8:106921/149‑1 (MQ=39) ccACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt < 6:144257/148‑1 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCACTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCATGCCCAGACGCCGGAAACCGTGAACATGTCCAACGGCCAAACGAt > 1:69308/1‑148 (MQ=14) cACGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 5:344451/1‑149 (MQ=255) cGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAcc < 5:396668/149‑1 (MQ=255) cGATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAcc < 8:309627/149‑1 (MQ=255) gATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 7:27618/1‑149 (MQ=255) gATCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 1:19898/1‑149 (MQ=255) gATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 8:322214/1‑149 (MQ=39) tCAACGACTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 1:208528/1‑149 (MQ=255) aaCGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa < 1:105034/136‑1 (MQ=40) aCGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGCGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTg > 7:104850/1‑147 (MQ=255) aCTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCg > 3:189619/1‑149 (MQ=255) cTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg < 2:226202/112‑1 (MQ=25) cTCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 1:226202/1‑112 (MQ=25) cTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:210839/149‑1 (MQ=39) cTCGGACGACACCACCACCGCGCCC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGACCACTTACACCGTGACCCTGAGCATCCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:297879/149‑1 (MQ=255) tCGGTCGACACCACTACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAc > 6:245415/1‑107 (MQ=17) ggTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 2:324750/1‑148 (MQ=39) ggTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 6:7334/1‑148 (MQ=39) acacCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc < 1:129386/149‑1 (MQ=39) accactaccGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc > 5:356721/1‑147 (MQ=255) cactaccGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg > 2:188824/1‑149 (MQ=255) caccGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAACGTGACCCTGAGCAACCCTGCCCAGACGCAGGTAACGGTCAACATGACAAACGGCAAACCCTTAACGGTTAAAGGGGGAAAAACCAAgggac > 2:117838/1‑147 (MQ=11) | GATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAA‑CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACC‑CTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCA > NC_002947/195488‑195782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |