| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,306 | T→C | 15.6% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,306 | 0 | T | C | 15.6% | 252.3 / 36.0 | 117 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (45/52); new base C (9/9); total (55/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 119 total aligned reads displayed.
CGGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACG > NC_002947/196158‑196454 | cGGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTTGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAAt < 8:210706/149‑1 (MQ=255) ggCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATcc < 3:130839/149‑1 (MQ=39) gCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCt < 3:165543/149‑1 (MQ=39) ggTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGc < 3:20423/149‑1 (MQ=39) aTTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCa < 8:31343/148‑1 (MQ=39) gAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGccc > 5:325639/1‑142 (MQ=39) gAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGccc < 6:325639/142‑1 (MQ=39) gAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGcc < 1:915/141‑1 (MQ=39) gAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGcc > 2:915/1‑141 (MQ=39) aaCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGt < 5:21706/148‑1 (MQ=35) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 3:209650/1‑149 (MQ=39) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCATGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 1:392489/1‑149 (MQ=255) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 3:7831/1‑149 (MQ=39) cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 2:128747/1‑149 (MQ=39) aaCCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCt < 5:70227/149‑1 (MQ=39) cccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt > 3:368317/1‑149 (MQ=39) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt > 1:286338/1‑148 (MQ=39) cGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc > 6:38725/1‑148 (MQ=39) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg > 3:241048/1‑149 (MQ=39) ccGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACgg < 4:35841/149‑1 (MQ=39) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGc < 3:234513/149‑1 (MQ=39) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGc > 4:369229/1‑149 (MQ=39) ggCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGcc < 6:34510/149‑1 (MQ=39) gCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGcc > 3:175301/1‑148 (MQ=39) cTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCa > 5:321159/1‑148 (MQ=39) cTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCa > 3:92395/1‑148 (MQ=39) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAc > 7:111143/1‑148 (MQ=39) gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa < 8:11360/146‑1 (MQ=39) gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa > 7:11360/1‑146 (MQ=39) gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa > 7:347177/1‑149 (MQ=39) aacACGATAAACGACTCGGTCGACACCACTACCCCGTCCCTGACGGCGAGCCA‑GTCGG‑TCACCGAAGTCGGCGTGATCACTTACAAA‑GTGACCCTGAGCAATCCTGCCCAGAAGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa > 1:182542/3‑148 (MQ=14) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGGTTCCCCGAAGGCGGCGTGCTCACTTTCACC‑GTGACCCTGAGCAATACTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAcc > 1:310133/1‑148 (MQ=14) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 3:293015/1‑149 (MQ=39) cggATCAACGACTCTGTCGACACCACTACAGCGTCCCTGTCGGCGAGCCC‑GTCGT‑TCACCGTAGGCGGCGTGATCACTTACACC‑GTGTCCCTGAGCAATCGTGCCCAGAATCCGGTTACAGTGAGCCTGTCAAACGGCCAAACCATTAc < 2:182542/147‑1 (MQ=14) aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 7:17694/1‑149 (MQ=39) aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 8:335333/1‑149 (MQ=39) cGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 5:159231/1‑125 (MQ=40) gATAAACGATTCTGTCGACACCACTACCGCGACTCTGACGCCGAGCCG‑GTCGG‑TGATCGAAGGCGGCGTGATCATTTACACG‑GTGACCGTGTGCAAACTTGCCGAGTCGCGGGTAATCGTGAACGTCTCGAACGGCCTAAGGATTAGCg < 8:150868/149‑1 (MQ=255) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 3:46585/149‑1 (MQ=39) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCAGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg > 1:80762/1‑131 (MQ=255) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg < 2:80762/130‑1 (MQ=40) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 6:3873/149‑1 (MQ=39) cGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg > 4:22278/1‑149 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 7:2039/147‑1 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 2:270467/147‑1 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 4:368317/147‑1 (MQ=39) gTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCa > 4:120512/1‑148 (MQ=39) accacTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCa < 5:38725/149‑1 (MQ=38) ccacTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAg < 3:369229/149‑1 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 5:394831/1‑125 (MQ=35) cacTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg > 6:113324/1‑149 (MQ=17) acTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGCCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg > 4:113720/1‑149 (MQ=37) cTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCCAACCATTACCGTTGAAGCCGGCAAGCCCCAggg > 5:388947/1‑148 (MQ=9) tACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa > 4:90313/1‑138 (MQ=33) tACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa < 3:90313/138‑1 (MQ=33) aCCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCTTTTAAGCCTGCAAAACCCAGGCCAg > 8:168641/1‑149 (MQ=11) ccGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc > 2:325820/1‑149 (MQ=34) ccTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGCCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt > 5:230584/1‑149 (MQ=21) ccTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACACTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGac > 4:171285/1‑147 (MQ=255) cTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACCGGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAACCCCAGGGCAGCGTCGAtt > 1:92103/1‑149 (MQ=255) cTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt < 3:64819/149‑1 (MQ=255) aCGGCGAGCGC‑GTCGG‑TCACCGAAGGCGGCGTGATGACTTACACC‑GTGACCCTGAGAAATCCTGCCCAGACGCCGGTGACTGTGTCGCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 2:214785/149‑1 (MQ=11) aCGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 2:229123/148‑1 (MQ=34) aCGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 1:211335/148‑1 (MQ=34) aCGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 2:92103/149‑1 (MQ=34) aCGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc < 5:335624/147‑1 (MQ=255) aCGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 4:375645/149‑1 (MQ=255) cGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcga < 3:171285/148‑3 (MQ=255) aGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAcccc < 1:325820/149‑1 (MQ=34) gCCC‑GTCGG‑TCTCCGAAGGCGGCGTTATCACTTACACC‑GTTACACTGAGCAATCCTGCCCATACGCCGGTGACAGTGACCCTGTCCAACTGCCAAACCATTACCGTTGAAGGCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 4:241048/149‑1 (MQ=11) cc‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGc < 3:13126/149‑1 (MQ=255) cc‑GTAGG‑TAACCGAATGCGGCGTGATTACTTACACC‑GTTACCCTTCTCAATCCTGCCAATACGCCGGTTACAGTGTCCCTTTCCAAGGGCGAAACCATTACCGTTGATGCCGGCAAAACCCAGGGCAGCTTCGATTTCCAGACCCCgtc < 4:175301/149‑3 (MQ=17) gg‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTACCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCAGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 4:115585/148‑1 (MQ=11) gggcACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 7:168641/145‑1 (MQ=11) aCCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt > 6:310447/1‑149 (MQ=34) aCCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt > 1:99064/1‑149 (MQ=255) ccGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg > 5:171363/1‑78 (MQ=34) ccGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg < 6:171363/78‑1 (MQ=34) cGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 8:326139/94‑1 (MQ=33) cGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt > 7:326139/1‑94 (MQ=18) aaGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACACCTGCGAATGACGTGTa > 8:320725/1‑148 (MQ=255) aaGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGCCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 3:113720/149‑1 (MQ=21) gcggcgTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg < 4:60784/72‑1 (MQ=34) gcggcgTGATCACTTACACC‑GTGACCCTGAGCAAGCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg > 3:60784/1‑72 (MQ=21) aTCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 5:310447/148‑1 (MQ=34) tCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 7:177008/148‑1 (MQ=255) tCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGGCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 7:188939/1‑148 (MQ=11) aCTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGTCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc < 5:305247/149‑1 (MQ=21) aCTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc < 2:5327/149‑1 (MQ=34) aCTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 7:222723/148‑1 (MQ=255) cc‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 4:209650/149‑1 (MQ=35) c‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcg > 6:333740/1‑147 (MQ=255) c‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcg > 6:19763/1‑147 (MQ=255) cctGACCCTGAGCAATCCTGCCCAGAAGCCGGTGACAGTGACCCTGTCAAACGGCCAAACAATTACCGTTCAAGCCGGCAAAACCCAGCGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAAAGGTTCGACTGTCAgtg > 6:2815/3‑149 (MQ=11) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 7:19092/1‑149 (MQ=37) gCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 7:114925/115‑1 (MQ=32) gCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 8:114925/1‑115 (MQ=32) aaTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGaa < 2:54884/149‑1 (MQ=37) aTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAAAGGTTCGACTGTCAGTGTCACCATCGAGAAc < 6:230584/149‑1 (MQ=37) tCCTGCCCAGACGCCGGTGACAGTGACGCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCACAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACg > 6:121601/1‑149 (MQ=255) | CGGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCC‑GTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACG > NC_002947/196158‑196454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |