| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,622,333 | C→T | 12.1% | intergenic (+124/‑224) | PP_5515 → / → PP_5516 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,622,333 | 0 | C | T | 12.1% | 82.4 / 2.9 | 33 | intergenic (+124/‑224) | PP_5515/PP_5516 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (14/15); new base T (2/2); total (16/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGGGCAAATGGCCCAAATGATTTTGTTGCAAAAATTTGAGAGCCCACCTCGAAATTGATAGGCCGCGACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTGGGGCTTTTTTGG > NC_002947/2622189‑2622476 | aaGGGCAAATGGCCCAAATGATTTTGTTGCAAAAATTTGAGAGCCCACCTCGAAATTGATAGGCCGCGACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACTCTCCGGGCAGGCCCCAAGTGGCCCAGCGGc < 8:58494/148‑1 (MQ=255) gCAAATGGCCCAAATGATTTTGTTGCAAAAATTTGAGAGCCCACCTCGAAATTGATAGGCCGCGACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGcc > 7:325716/1‑148 (MQ=255) tGGCCCAAATGATTTTGTTGCAAAAATTTGAGAGCCCACCTCGAAATTGATAGGCCGCGACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCCGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAAtgt < 8:102671/149‑1 (MQ=255) aaaaaTTTGAGAGCCCACCTCGAAATTGATAGGCCGCGACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGTGGCAGCCCAATGTGTCCCGGAATGTGTGCAACAt > 6:105236/1‑149 (MQ=255) aaaaaTTTGAGAGCCCACCTCGAAATTGATAGGCCGCGACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGTGGCAGCCCAATGTGTCCCGGAATGTGTCCCACAt > 6:110858/1‑149 (MQ=255) aaaaaTTTGAGAGCCCACCTCGAAATTGATAGGCCGCGACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACAt > 8:30107/1‑149 (MQ=255) tttGAGAGCCCACCTCGAAATTGATAGGCCGCGACTACCCCCGGTGCCTCCAGGGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTg < 1:323323/149‑1 (MQ=255) agagCCCACCTCGAAATTGATAGGCCGCGACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGaaa < 5:372543/149‑1 (MQ=255) ccGCGACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCa > 4:299915/1‑149 (MQ=255) gcgACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCAc > 1:10788/1‑148 (MQ=255) gcgACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCAc > 5:213714/1‑148 (MQ=255) gACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAAccc < 8:129991/124‑1 (MQ=255) gACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAAccc > 7:129991/1‑124 (MQ=255) tACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGAtt < 3:68306/149‑1 (MQ=255) ccccGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGAtt > 1:371003/1‑146 (MQ=255) ccGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCTGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGaa < 8:325716/149‑1 (MQ=255) cTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCcgcg < 2:371003/149‑1 (MQ=255) cAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCgcgc < 6:59494/147‑1 (MQ=255) agcCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGAACCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCCCCAGATTAAGAATCCCGCGCTCCACCTTTc > 7:87203/1‑149 (MQ=255) ccAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGTGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCa < 5:110858/149‑1 (MQ=255) ccAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGAGTAAGAATCCCGCGCTCCACCTTTc > 4:113169/1‑147 (MQ=255) ccAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGACCCAAGTGGCCCAGTGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCa < 5:105236/149‑1 (MQ=255) cAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAg > 1:174765/1‑149 (MQ=255) cAAAATCCGCACTATGAGAACCATCCGGGCAGGCCCCAAGAGGACCCGCGGAAGCCCAAGCTGACCCGGAATGTGTCCCACATGCCTGGAAACCCCAGTAAACACGGGACCTGTAACCAGATTAAGAATCCCGCGCACAACCTTTCAAg > 2:236926/1‑149 (MQ=255) tCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCTGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTca < 4:93712/149‑1 (MQ=255) cGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTca > 2:245502/1‑147 (MQ=255) ggCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCATCCTCACATGCGGCCATCTTCGGCCCTTtttg < 2:351132/149‑1 (MQ=255) gCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTgg > 2:7997/1‑149 (MQ=255) ccccAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGACTGTGTCCCACATGGCTGGAACCCCCCGTAAACACGGGACCTGTCACCAGCTGAAGACTCCCGCGCGCCACCTGTCCAGCCTCACAGGCGGCCAGCTGCGGCCC‑TTGTgggg > 5:78012/1‑149 (MQ=255) ccccAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTggg < 6:213714/149‑1 (MQ=255) gTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTGGGGCtttt < 3:37465/149‑1 (MQ=255) cccAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTGGGGCTTTTTTgg < 3:299915/149‑1 (MQ=255) cccAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTGGGGCTTTTTTgg < 2:10788/149‑1 (MQ=255) | AAGGGCAAATGGCCCAAATGATTTTGTTGCAAAAATTTGAGAGCCCACCTCGAAATTGATAGGCCGCGACTACCCCCGGTGCCTCCAGCGAGCAGCCAAAATCCGCCCTCTGAGAACCCTCCGGGCAGGCCCCAAGTGGCCCAGCGGCAGCCCAATGTGTCCCGGAATGTGTCCCACATGGCTGGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTGGGGCTTTTTTGG > NC_002947/2622189‑2622476 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |