| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,351 | C→G | 27.5% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,351 | 0 | C | G | 27.5% | 142.6 / 66.7 | 94 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (28/39); new base G (11/15); total (40/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACC > NC_002947/196204‑196483 | gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa > 7:347177/1‑149 (MQ=39) aacACGATAAACGACTCGGTCGACACCACTACCCCGTCCCTGACGGCGAGCCAGTCGG‑TCACCGAAGTCGGCGTGATCACTTACAAA‑GTGACCCTGAGCAATCCTGCCCAGAAGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa > 1:182542/3‑148 (MQ=14) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTTCCCCGAAGGCGGCGTGCTCACTTTCACC‑GTGACCCTGAGCAATACTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAcc > 1:310133/1‑148 (MQ=14) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 3:293015/1‑149 (MQ=39) cggATCAACGACTCTGTCGACACCACTACAGCGTCCCTGTCGGCGAGCCCGTCGT‑TCACCGTAGGCGGCGTGATCACTTACACC‑GTGTCCCTGAGCAATCGTGCCCAGAATCCGGTTACAGTGAGCCTGTCAAACGGCCAAACCATTAc < 2:182542/147‑1 (MQ=14) aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 8:335333/1‑149 (MQ=39) aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 7:17694/1‑149 (MQ=39) cGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc < 4:293015/149‑1 (MQ=39) gATAAACGATTCTGTCGACACCACTACCGCGACTCTGACGCCGAGCCGGTCGG‑TGATCGAAGGCGGCGTGATCATTTACACG‑GTGACCGTGTGCAAACTTGCCGAGTCGCGGGTAATCGTGAACGTCTCGAACGGCCTAAGGATTAGCg < 8:150868/149‑1 (MQ=255) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 3:46585/149‑1 (MQ=39) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa < 4:7831/149‑1 (MQ=39) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 6:3873/149‑1 (MQ=39) cGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg > 4:22278/1‑149 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 7:2039/147‑1 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 4:368317/147‑1 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 2:270467/147‑1 (MQ=39) gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCa > 4:120512/1‑148 (MQ=39) cGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaaaa < 3:334405/149‑1 (MQ=40) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaaga < 7:335333/148‑3 (MQ=25) accacTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAcc > 8:63361/1‑147 (MQ=17) accacTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCa < 5:38725/149‑1 (MQ=38) ccacTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAg < 3:369229/149‑1 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa < 6:394831/125‑1 (MQ=35) cacTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 5:394831/1‑125 (MQ=35) cacTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg > 6:113324/1‑149 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg > 1:54884/1‑149 (MQ=37) acTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGCCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg > 4:113720/1‑149 (MQ=37) acTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCATGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg < 3:195852/149‑1 (MQ=17) cTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCCAACCATTACCGTTGAAGCCGGCAAGCCCCAggg > 5:388947/1‑148 (MQ=9) tACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa > 4:90313/1‑138 (MQ=33) tACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa < 3:90313/138‑1 (MQ=33) aCCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCTTTTAAGCCTGCAAAACCCAGGCCAg > 8:168641/1‑149 (MQ=11) aCCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAg > 4:13126/1‑149 (MQ=12) ccGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc > 2:325820/1‑149 (MQ=34) ccTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGCCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt > 5:230584/1‑149 (MQ=21) ccTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACACTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGac > 4:171285/1‑147 (MQ=255) cTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACCGGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAACCCCAGGGCAGCGTCGAtt > 1:92103/1‑149 (MQ=255) cTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt < 3:64819/149‑1 (MQ=255) aCGGCGAGCGCGTCGG‑TCACCGAAGGCGGCGTGATGACTTACACC‑GTGACCCTGAGAAATCCTGCCCAGACGCCGGTGACTGTGTCGCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 2:214785/149‑1 (MQ=11) aCGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 6:321159/148‑1 (MQ=34) aCGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 1:211335/148‑1 (MQ=34) aCGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 2:229123/148‑1 (MQ=34) aCGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 2:92103/149‑1 (MQ=34) aCGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc < 5:335624/147‑1 (MQ=255) aCGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 4:375645/149‑1 (MQ=255) cGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcga < 3:171285/148‑3 (MQ=255) aGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAcccc < 1:325820/149‑1 (MQ=34) aGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAcccc < 3:120512/149‑1 (MQ=34) gCCCGTCGG‑TCTCCGAAGGCGGCGTTATCACTTACACC‑GTTACACTGAGCAATCCTGCCCATACGCCGGTGACAGTGACCCTGTCCAACTGCCAAACCATTACCGTTGAAGGCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 4:241048/149‑1 (MQ=11) ccGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGc < 3:13126/149‑1 (MQ=255) ccGTAGG‑TAACCGAATGCGGCGTGATTACTTACACC‑GTTACCCTTCTCAATCCTGCCAATACGCCGGTTACAGTGTCCCTTTCCAAGGGCGAAACCATTACCGTTGATGCCGGCAAAACCCAGGGCAGCTTCGATTTCCAGACCCCgtc < 4:175301/149‑3 (MQ=17) gg‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTACCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCAGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 4:115585/148‑1 (MQ=11) gggcACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 7:168641/145‑1 (MQ=11) tCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGCCCCCGGCGAATgcc > 7:179112/1‑147 (MQ=11) aCCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt > 6:310447/1‑149 (MQ=34) aCCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt > 1:99064/1‑149 (MQ=255) cGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 8:326139/94‑1 (MQ=33) cGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt > 7:326139/1‑94 (MQ=18) aaGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACACCTGCGAATGACGTGTa > 8:320725/1‑148 (MQ=255) aaGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGCCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 3:113720/149‑1 (MQ=21) aTCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 5:310447/148‑1 (MQ=34) tCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 7:177008/148‑1 (MQ=255) tCACTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGGCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 7:188939/1‑148 (MQ=11) aCTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGTCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc < 5:305247/149‑1 (MQ=21) aCTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc < 2:5327/149‑1 (MQ=34) aCTTACACC‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 7:222723/148‑1 (MQ=255) cc‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 4:209650/149‑1 (MQ=35) c‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcg > 6:19763/1‑147 (MQ=255) c‑GTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcg > 6:333740/1‑147 (MQ=255) cctGACCCTGAGCAATCCTGCCCAGAAGCCGGTGACAGTGACCCTGTCAAACGGCCAAACAATTACCGTTCAAGCCGGCAAAACCCAGCGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAAAGGTTCGACTGTCAgtg > 6:2815/3‑149 (MQ=11) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 7:19092/1‑149 (MQ=37) gCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 8:114925/1‑115 (MQ=32) gCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 7:114925/115‑1 (MQ=32) aaTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGaa < 2:54884/149‑1 (MQ=37) acccTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACgg < 3:185847/119‑1 (MQ=255) acccTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACgg > 4:185847/3‑121 (MQ=255) aTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAAAGGTTCGACTGTCAGTGTCACCATCGAGAAc < 6:230584/149‑1 (MQ=37) tCCTGCCCAGACGCCGGTGACAGTGACGCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCACAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACg > 6:121601/1‑149 (MQ=255) ccTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 6:115867/116‑1 (MQ=255) ccTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc < 2:243914/129‑1 (MQ=12) ccTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc > 1:243914/1‑129 (MQ=12) cTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 5:130251/125‑1 (MQ=12) cTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 6:130251/1‑125 (MQ=12) tGCCCAGACGCCGGTTACTGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 4:281356/85‑1 (MQ=255) tGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGc > 4:282740/1‑147 (MQ=17) tGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGc < 3:282740/147‑1 (MQ=17) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 3:166981/124‑1 (MQ=35) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa > 4:166981/1‑124 (MQ=35) gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCATTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCg > 7:329180/1‑127 (MQ=38) gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCATTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCg < 8:329180/127‑1 (MQ=38) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc < 1:128747/149‑1 (MQ=39) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 8:19092/149‑1 (MQ=39) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga > 6:218510/1‑116 (MQ=35) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga < 5:218510/116‑1 (MQ=35) tGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGCCGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAcc > 7:228642/1‑149 (MQ=37) | GACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGG‑TCACCGAAGGCGGCGTGATCACTTACACC‑GTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACC > NC_002947/196204‑196483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |