Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,787,629 C→G 9.4% intergenic (+76/‑49) ahpC → / → ahpF peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,787,6290CG 9.4% 156.1 / 7.2 53intergenic (+76/‑49)ahpC/ahpFperoxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
Reads supporting (aligned to +/- strand):  ref base C (23/25);  new base G (2/3);  total (25/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.80e-01

CCAAGTGGAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGGCGCGAAGTCCC  >  NC_002947/2787492‑2787777
                                                                                                                                          |                                                                                                                                                    
ccAAGTGGAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCAGGCGAGGTCGCCCGGGc                                                                                                                                           <  4:362033/149‑1 (MQ=255)
ccAAGTGGAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCAGGCGAGGTCGCCCGGGc                                                                                                                                           <  1:345325/149‑1 (MQ=255)
    gTGGAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCAGGCGAGGTCGCCCGGGCGttt                                                                                                                                       <  2:70908/149‑1 (MQ=255)
       gAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGttttt                                                                                                                                     <  5:194495/148‑1 (MQ=255)
       gAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTg                                                                                                                                    >  1:346696/1‑149 (MQ=255)
         aagaagGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTa                                                                                                                                  >  3:11397/1‑149 (MQ=255)
                             gcgcCGTCGCTGGACCTCGTAGGCAAGATCTTAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGaaaaa                                                                                                                  <  7:34031/145‑1 (MQ=255)
                                 cGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGc                                                                                                          <  4:157316/149‑1 (MQ=255)
                                   tCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGccc                                                                                                        <  3:311870/149‑1 (MQ=255)
                                    cGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGGCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCg                                                                                                       <  7:151244/149‑1 (MQ=255)
                                                 aGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGc                                                                                           <  6:362947/148‑1 (MQ=255)
                                                  ggCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCa                                                                                         >  5:388195/1‑149 (MQ=255)
                                                          cTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTaaa                                                                                 >  6:19614/1‑149 (MQ=255)
                                                           tAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAAt                                                                                >  7:309/1‑149 (MQ=255)
                                                            aaGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATc                                                                               <  4:19773/149‑1 (MQ=255)
                                                             aGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAAt                                                                                <  3:19473/147‑1 (MQ=255)
                                                             aGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATc                                                                               <  7:358401/148‑1 (MQ=255)
                                                             aGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCg                                                                              <  2:346696/149‑1 (MQ=255)
                                                              ggTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCg                                                                              >  2:20956/1‑148 (MQ=255)
                                                              ggTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGc                                                                             <  6:388195/149‑1 (MQ=255)
                                                              ggTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGc                                                                             <  5:117419/149‑1 (MQ=255)
                                                                  aTGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACt                                                                         <  5:43410/149‑1 (MQ=255)
                                                                    gCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGATAGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCGTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATAGCCCGTATGTTGGACg                                                                                            >  1:267311/1‑129 (MQ=255)
                                                                    gCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTg                                                                        >  4:221543/1‑148 (MQ=255)
                                                                       cATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGaaaa                                                                    >  7:13520/1‑149 (MQ=255)
                                                                       cATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGaaaa                                                                    >  7:275574/1‑149 (MQ=255)
                                                                         tAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAAcc                                                                  <  7:215422/149‑1 (MQ=255)
                                                                         tAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAAcc                                                                  <  7:221181/149‑1 (MQ=255)
                                                                          aaCGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAACAcc                                                                  >  8:97718/1‑148 (MQ=255)
                                                                                     tAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCgg                                                      <  8:275574/149‑1 (MQ=255)
                                                                                     tAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCgg                                                      >  2:337253/1‑149 (MQ=255)
                                                                                       agcagcCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCggg                                                     <  3:221543/148‑1 (MQ=255)
                                                                                           gccgccAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCAcc                                                <  4:11397/149‑1 (MQ=255)
                                                                                               ccAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGc                                            >  8:304405/1‑149 (MQ=255)
                                                                                                    gCTGT‑ATTACCTTCCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATc                                       <  7:204331/149‑1 (MQ=255)
                                                                                                    gCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTgg                                                           >  4:176365/1‑129 (MQ=255)
                                                                                                    gCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTgg                                                           <  3:176365/129‑1 (MQ=255)
                                                                                                      tGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATc                                       >  6:249622/1‑147 (MQ=255)
                                                                                                             acctaccGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTGAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGt                               >  6:13788/1‑149 (MQ=255)
                                                                                                              cctaccGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGtt                              <  1:337253/149‑1 (MQ=255)
                                                                                                              cctaccGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGtt                              <  8:309/149‑1 (MQ=255)
                                                                                                               ctaccGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCAAGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTg                             <  8:13520/149‑1 (MQ=255)
                                                                                                                   cGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTc                         >  8:106481/1‑149 (MQ=255)
                                                                                                                        cGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTc                     >  2:69466/1‑148 (MQ=255)
                                                                                                                          aaaaaCGCCCAGGCGAGGTCGCCCGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTcgac                  >  3:65145/3‑149 (MQ=255)
                                                                                                                             aaCGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTccc                       <  5:233131/141‑1 (MQ=255)
                                                                                                                             aaCGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTccc                       >  6:233131/1‑141 (MQ=255)
                                                                                                                             aaCGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCGACTTGGAGCGGGTCACCCCGCCGATAGAGATCGTTGCTTCCCTCgacgac               >  5:208621/1‑149 (MQ=255)
                                                                                                                                gCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCAGAGTTTTGAAAAAGAAATCTACAGAATGTTGGAAGCCAAGCTTAAATAGCAACTGAAAAAATACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGgc            >  6:162264/1‑149 (MQ=255)
                                                                                                                                gCCCAGGCGAGGTCGCCCGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGgc            >  7:167489/1‑149 (MQ=255)
                                                                                                                                  ccGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGgcgc          >  2:177123/1‑149 (MQ=255)
                                                                                                                                        gACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGgc            <  7:324585/141‑1 (MQ=255)
                                                                                                                                        gACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGgc            >  8:324585/1‑141 (MQ=255)
                                                                                                                                          ccTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGGCGCGAAGTccc  <  5:249622/149‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                                    
CCAAGTGGAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGGCGCGAAGTCCC  >  NC_002947/2787492‑2787777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑