Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,787,636 | T→C | 10.7% | intergenic (+83/‑42) | ahpC → / → ahpF | peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,787,636 | 0 | T | C | 10.7% | 143.4 / 7.8 | 56 | intergenic (+83/‑42) | ahpC/ahpF | peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F |
Reads supporting (aligned to +/- strand): ref base T (23/27); new base C (2/4); total (25/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.82e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.03e-01 |
CCAAGTGGAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGGCGCGAAGTCCCGCGAATT > NC_002947/2787492‑2787784 | ccAAGTGGAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCAGGCGAGGTCGCCCGGGc < 1:345325/149‑1 (MQ=255) ccAAGTGGAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCAGGCGAGGTCGCCCGGGc < 4:362033/149‑1 (MQ=255) gTGGAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCAGGCGAGGTCGCCCGGGCGttt < 2:70908/149‑1 (MQ=255) gAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGttttt < 5:194495/148‑1 (MQ=255) gAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTg > 1:346696/1‑149 (MQ=255) aagaagGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTa > 3:11397/1‑149 (MQ=255) gcgcCGTCGCTGGACCTCGTAGGCAAGATCTTAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGaaaaa < 7:34031/145‑1 (MQ=255) cGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGc < 4:157316/149‑1 (MQ=255) tCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGccc < 3:311870/149‑1 (MQ=255) cGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGGCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCg < 7:151244/149‑1 (MQ=255) aGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGc < 6:362947/148‑1 (MQ=255) ggCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCa > 5:388195/1‑149 (MQ=255) cTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTaaa > 6:19614/1‑149 (MQ=255) tAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAAt > 7:309/1‑149 (MQ=255) aaGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATc < 4:19773/149‑1 (MQ=255) aGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAAt < 3:19473/147‑1 (MQ=255) aGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATc < 7:358401/148‑1 (MQ=255) aGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCg < 2:346696/149‑1 (MQ=255) ggTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCg > 2:20956/1‑148 (MQ=255) ggTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGc < 6:388195/149‑1 (MQ=255) ggTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGc < 5:117419/149‑1 (MQ=255) aTGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACt < 5:43410/149‑1 (MQ=255) gCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGATAGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCGTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATAGCCCGTATGTTGGACg > 1:267311/1‑129 (MQ=255) gCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTg > 4:221543/1‑148 (MQ=255) cATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGaaaa > 7:13520/1‑149 (MQ=255) cATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGaaaa > 7:275574/1‑149 (MQ=255) tAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAAcc < 7:215422/149‑1 (MQ=255) tAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAAcc < 7:221181/149‑1 (MQ=255) aaCGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAACAcc > 8:97718/1‑148 (MQ=255) tAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCgg > 2:337253/1‑149 (MQ=255) tAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCgg < 8:275574/149‑1 (MQ=255) agcagcCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCggg < 3:221543/148‑1 (MQ=255) gccgccAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCAcc < 4:11397/149‑1 (MQ=255) ccAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGc > 8:304405/1‑149 (MQ=255) gCTGT‑ATTACCTTCCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATc < 7:204331/149‑1 (MQ=255) gCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTgg < 3:176365/129‑1 (MQ=255) gCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTgg > 4:176365/1‑129 (MQ=255) tGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATc > 6:249622/1‑147 (MQ=255) acctaccGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTGAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGt > 6:13788/1‑149 (MQ=255) cctaccGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGtt < 1:337253/149‑1 (MQ=255) cctaccGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGtt < 8:309/149‑1 (MQ=255) ctaccGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCAAGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTg < 8:13520/149‑1 (MQ=255) cGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTc > 8:106481/1‑149 (MQ=255) cGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTc > 2:69466/1‑148 (MQ=255) aaaaaCGCCCAGGCGAGGTCGCCCGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTcgac > 3:65145/3‑149 (MQ=255) aaCGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTccc < 5:233131/141‑1 (MQ=255) aaCGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTccc > 6:233131/1‑141 (MQ=255) aaCGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCGACTTGGAGCGGGTCACCCCGCCGATAGAGATCGTTGCTTCCCTCgacgac > 5:208621/1‑149 (MQ=255) gCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCAGAGTTTTGAAAAAGAAATCTACAGAATGTTGGAAGCCAAGCTTAAATAGCAACTGAAAAAATACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGgc > 6:162264/1‑149 (MQ=255) gCCCAGGCGAGGTCGCCCGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGgc > 7:167489/1‑149 (MQ=255) ccGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGgcgc > 2:177123/1‑149 (MQ=255) gACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGgc < 7:324585/141‑1 (MQ=255) gACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGgc > 8:324585/1‑141 (MQ=255) ccTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGGCGCGAAGTccc < 5:249622/149‑1 (MQ=255) tCGCCCGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGGCGCGAAGTCCcgc < 8:167489/149‑1 (MQ=255) ccTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGGCGCGAAGTCCCGCGaa < 1:20956/149‑1 (MQ=255) tGGGCGTTTTTGTATCCGAGTGTTGAAAAAGGAATCGCCCTTATGTTGGACGCCACGCTTAAATAGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGGCGCGAAGTCCAGCGAAtt > 1:65768/1‑149 (MQ=255) | CCAAGTGGAAAGAAGGCGAAGCCACTCTGGCGCCGTCGCTGGACCTCGTAGGCAAGATCTAAGGTCATGCCCATAACGCGGGCGGTAAGCAGCCGCCAAAGCTGA‑AGTACCTACCGCCCCGTCAAACGCCCGGGCGACCTCGCCTGGGCGTTTTTGTATCCGAGTTTTGAAAAAGGAATCGCCCGTATGTTGGACGCCACGCTTAAATCGCAACTGAAAACCTACTTGGAGCGGGTCACCCAGCCGATCGAGATCGTTGCTTCCCTCGACGACGGCGCGAAGTCCCGCGAATT > NC_002947/2787492‑2787784 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |