| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,032 | C→T | 5.9% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,032 | 0 | C | T | 5.9% | 722.4 / 21.1 | 255 | T846T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (122/115); new base T (8/7); total (133/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.88e-01 | |||||||||||
Only 100 of 260 total aligned reads displayed.
CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAA > NC_002947/196913‑197180 | aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCg < 1:52351/149‑1 (MQ=17) aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCgg < 4:289423/149‑1 (MQ=32) gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAAttt > 5:202947/1‑149 (MQ=37) accgTGACCCTGTCCAACGGCCCAACCAGTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACTGGCGGTAATTTCGa < 4:154049/146‑1 (MQ=0) accgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg < 2:269804/145‑1 (MQ=1) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 5:106401/149‑1 (MQ=34) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 7:23091/149‑1 (MQ=34) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ATCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 1:283118/148‑1 (MQ=17) cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTg > 7:368057/1‑149 (MQ=32) ccTGTCCAACGGCCAAACCATTCCCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 7:60779/1‑149 (MQ=17) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 3:222273/142‑1 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 1:119774/1‑149 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa < 2:40372/149‑1 (MQ=32) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc < 4:175786/149‑1 (MQ=32) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAAAGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 3:43158/1‑149 (MQ=17) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 6:279456/1‑148 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGa > 3:75468/1‑148 (MQ=32) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGCCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 6:28464/149‑1 (MQ=21) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 7:329257/146‑1 (MQ=34) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc > 8:329257/1‑146 (MQ=34) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTTGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGccc > 7:187068/1‑149 (MQ=21) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 6:373138/1‑127 (MQ=32) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc > 6:140088/1‑149 (MQ=35) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc > 5:165941/1‑149 (MQ=35) aCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcccc > 8:102496/1‑149 (MQ=37) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc > 4:225810/1‑135 (MQ=32) ccGTTGAAGCCGGCAAGCCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa > 4:242838/1‑122 (MQ=17) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 3:242838/122‑1 (MQ=32) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt > 8:53419/1‑146 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAg < 4:75468/149‑1 (MQ=37) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAgc > 6:61264/1‑148 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCTGCTTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGTCTCAGA‑cc < 2:113420/149‑1 (MQ=255) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑c > 4:378938/1‑148 (MQ=37) aaGCCGGCAAGCCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGGAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGC‑CCAc > 5:300497/1‑148 (MQ=255) gCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGAt < 6:204552/149‑1 (MQ=37) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATc > 2:39332/1‑148 (MQ=37) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAAGTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATc > 5:395721/1‑148 (MQ=37) ggCAAGACCCAGGGCAGCGTCGAGTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGGGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGGTCAGC‑CGAGGATCac > 8:157019/1‑148 (MQ=11) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAAc < 6:167348/149‑1 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAAc < 5:279456/149‑1 (MQ=37) aaGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGa > 2:382196/1‑149 (MQ=37) gACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 1:388343/1‑103 (MQ=32) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTc > 8:41117/1‑149 (MQ=34) cccAGTGTAGCGTCGATTTCCAGACCCCTGAGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCg < 8:266092/149‑1 (MQ=255) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCAc > 5:332245/1‑135 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCgg > 5:126577/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCgg > 5:192609/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCgg > 3:313133/1‑149 (MQ=34) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGt < 4:134642/149‑1 (MQ=34) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGt < 6:126577/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa < 8:159552/129‑1 (MQ=35) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa > 7:159552/1‑129 (MQ=35) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGa < 7:293049/149‑1 (MQ=34) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGac > 2:224440/1‑148 (MQ=18) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGac < 5:215779/149‑2 (MQ=18) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt < 1:353672/95‑1 (MQ=33) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGccac > 2:319286/1‑149 (MQ=39) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGccac > 6:223874/1‑149 (MQ=39) aTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCaccacc < 5:61264/149‑1 (MQ=39) tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACcg < 6:395721/149‑1 (MQ=39) ttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCAGGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACcg > 1:86827/1‑149 (MQ=255) tCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACcgcg > 2:179106/1‑149 (MQ=39) cccgACGCCGGCGAATGACGTCTACAACAACGGTTCG‑CCCGTCA‑GCGTCCGCCTCGAGAACGCGACAGGCGGGAATTTCGGGCAACGGACCCCGACTCCGCCGCCGGCTCAGA‑CCACGATCAACGACTCGGGGGATGCCACCAACGCGa > 6:15209/4‑149 (MQ=11) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACTGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGc > 3:174164/1‑138 (MQ=17) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAAc < 5:76073/124‑1 (MQ=35) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGa > 7:193778/1‑149 (MQ=39) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGa > 2:203046/1‑149 (MQ=39) ccAGACCCCGGCGAATGACGACTACAACAACGGATCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCCCAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCAGGCTCAGC‑CCACGATcccc > 6:76073/1‑121 (MQ=11) agagCCCGGAGTATGAGGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGAGTCGGTCGATGCCACCACCGCGAcc < 3:299223/149‑1 (MQ=14) gACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACTGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc < 7:311163/149‑1 (MQ=21) aCCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACTGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCt > 2:9342/1‑149 (MQ=21) aCCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCt > 7:348004/1‑149 (MQ=39) cccGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa > 7:165882/1‑149 (MQ=39) gCGAATGACGTCTACAACAACGGTTTG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc < 2:140888/149‑1 (MQ=255) gAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa < 4:313133/149‑1 (MQ=38) aTGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCCGACgggctcg > 2:30033/1‑144 (MQ=255) tGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGcc > 6:315986/1‑149 (MQ=37) gTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGa > 3:10219/1‑100 (MQ=33) tCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 7:135387/149‑1 (MQ=37) tCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 6:210941/1‑149 (MQ=37) cTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg < 4:193677/136‑1 (MQ=37) tACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa > 7:4147/1‑139 (MQ=37) acaacaACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCg < 7:215688/48‑1 (MQ=38) acaacaACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCg > 8:215688/1‑48 (MQ=38) caacaaCGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 1:102553/146‑1 (MQ=255) aacaacTGATCG‑ACCGTCA‑GCGCCACCATAGAGAACCCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 6:300497/149‑1 (MQ=11) aacaacGGTTCG‑ACTGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 8:64997/149‑1 (MQ=21) aacaacGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 5:345130/1‑144 (MQ=37) aacaacGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 6:345130/144‑1 (MQ=37) aacaacGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 1:342814/1‑149 (MQ=37) caacGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 3:375645/1‑148 (MQ=37) gTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc > 8:30611/1‑149 (MQ=37) ttCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 1:144487/1‑149 (MQ=37) tCG‑ACTGTCA‑GAGTCACCATCGAGAACGCCACATGCGGTAATTTCGATCAACTTACCCCGAACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 6:193627/148‑1 (MQ=11) tCG‑ACCGTCA‑GCGTCACCATCGAGAACCCCACAGGCTGTAATTTCGAGCAACGGACCCCGACTCCGACCCCGGCGCAGA‑CCACGATCCACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg < 5:15209/149‑1 (MQ=11) cG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 4:193423/1‑149 (MQ=37) g‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 7:102496/148‑1 (MQ=37) g‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 8:348004/148‑1 (MQ=37) cGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGtga < 1:203274/149‑3 (MQ=25) cGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa > 2:168706/1‑149 (MQ=38) | CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCG‑ACCGTCA‑GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAA > NC_002947/196913‑197180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |