| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,089 | T→C | 14.2% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,089 | 0 | T | C | 14.2% | 701.9 / 92.3 | 307 | N865N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (141/119); new base C (21/22); total (165/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
Only 100 of 309 total aligned reads displayed.
GGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGT > NC_002947/196943‑197237 | ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCGC‑AGGCGGGAATTTCGAGCCACTGACCCCGA‑AGcc > 6:286209/1‑149 (MQ=255) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATcc < 7:329257/146‑1 (MQ=34) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTTGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGccc > 7:187068/1‑149 (MQ=21) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGAcc > 8:270690/1‑149 (MQ=35) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGAcc > 5:165941/1‑149 (MQ=35) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGAccc < 2:212393/149‑1 (MQ=35) aCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGAcccc > 5:36984/1‑149 (MQ=37) aCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGAcccc < 2:174231/149‑1 (MQ=37) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCt < 4:89174/149‑1 (MQ=37) aCCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCt > 6:113900/1‑147 (MQ=37) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGa < 4:43158/149‑1 (MQ=37) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGCTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGa > 4:239360/1‑149 (MQ=37) gTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑c < 6:36984/149‑1 (MQ=37) gTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑c > 5:129789/1‑149 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCTGCTTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGTCTCAGA‑cc < 2:113420/149‑1 (MQ=255) gAAGCCTTCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCa < 3:250730/148‑1 (MQ=255) gACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACt < 6:165941/149‑1 (MQ=35) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTc > 8:41117/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCgg > 5:192609/1‑149 (MQ=34) aGGGCAGCGTCGATTTCCAGTCCCCGGCTAATGACGTCTACTACAACGGTTCGACCGTCA‑GCGTCACCTTCGAGAACGCCAC‑AGGCGGTAATTTCGTGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTc < 3:308919/149‑1 (MQ=11) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGa < 8:159552/129‑1 (MQ=35) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTc < 4:372097/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACAGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGCGCCCGA‑ATCCGCCCCCGGCTCAGA‑CCACGATAAACGACTCggac > 6:254989/1‑147 (MQ=11) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGATCGCCCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCACCTGACCCCGA‑AACCGACCCCGGCTCAGA‑CCACGATCCACGACTCGGTc > 4:308919/1‑149 (MQ=11) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGa > 6:144590/1‑149 (MQ=34) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGa < 7:293049/149‑1 (MQ=34) aGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCTCGATCAACGACTCGGTCGacac < 4:174210/149‑4 (MQ=17) aTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCaccacc > 5:44407/1‑149 (MQ=39) ttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGGCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACcg > 1:86827/1‑149 (MQ=255) ccAGACCCCGGCGAATGACGACTACAACAACGGATCGACCGTCA‑GCGTCACCATCGAGAACGCCCC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCAGGCTCAGC‑CCACGATcccc > 6:76073/1‑121 (MQ=11) gACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc < 7:311163/149‑1 (MQ=21) cGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCg < 3:6613/149‑1 (MQ=38) gAATGACGTCTACAACAACGGTTCGACTGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc > 2:79402/1‑147 (MQ=21) tGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGcc > 6:315986/1‑149 (MQ=37) gTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGa < 4:10219/100‑1 (MQ=33) gTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGa > 3:10219/1‑100 (MQ=33) gTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTc < 2:384487/149‑1 (MQ=37) gTCTACAACAACGGTTCGACAGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCACCCACTCGGTCGATGCCACCACCACGACCCTGACGGCGAGCCCgac > 4:203404/1‑147 (MQ=255) tCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 5:223874/149‑1 (MQ=37) tCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 7:135387/149‑1 (MQ=37) tCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 6:210941/1‑149 (MQ=37) tACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa > 7:4147/1‑139 (MQ=37) tACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCgg > 8:236868/1‑148 (MQ=37) caacaaCGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGACCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 1:102553/146‑1 (MQ=255) caacaaCGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCgg < 6:202947/146‑1 (MQ=37) caacGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAg > 5:205435/1‑135 (MQ=37) caacGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 3:375645/1‑148 (MQ=37) caacGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 7:149154/1‑148 (MQ=37) acGGTTCTACTGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 7:160785/149‑1 (MQ=255) gTTCGACCGTCA‑GCGTCACCATCGAGAACGCCACTAGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg > 1:53028/1‑149 (MQ=255) gTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc > 8:58590/1‑149 (MQ=37) ttCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 1:144487/1‑149 (MQ=37) ttCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 6:44407/149‑1 (MQ=37) ttCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 1:330624/1‑149 (MQ=37) cGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 4:193423/1‑149 (MQ=37) gACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGGTGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTAACCGAAGgcggcg > 7:213167/1‑149 (MQ=255) gACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 7:102496/148‑1 (MQ=37) gTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt > 7:170301/1‑149 (MQ=39) gTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt < 8:78814/149‑1 (MQ=39) tCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt > 6:341921/1‑148 (MQ=39) tCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt > 2:29891/1‑148 (MQ=255) tCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATc < 8:328893/149‑1 (MQ=255) gCGTCACCATCGAGAACGCCAC‑AGGCGTCAAATTCGACCACCTGCCCCCGA‑AACCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCcaccac < 3:332974/100‑1 (MQ=11) ctCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTa < 8:118373/148‑1 (MQ=37) tCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 3:174576/1‑148 (MQ=17) ccATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑CTCAGACCCCGGCTCAGA‑CGAGGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGGCGGTCGCCGGAGGCGGCGGAGTCGCCTACGcc > 4:151255/1‑149 (MQ=11) cATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 4:68731/1‑149 (MQ=17) cATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 5:320146/1‑149 (MQ=37) aTCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt > 3:193591/1‑149 (MQ=37) gagaACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 5:341921/149‑1 (MQ=37) gagaACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 7:367992/149‑1 (MQ=37) agaACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 8:193778/149‑1 (MQ=17) agaACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTaca > 8:138572/1‑141 (MQ=37) aCGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTg < 1:39332/149‑1 (MQ=17) cGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 1:168706/149‑1 (MQ=37) cGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 1:29891/149‑1 (MQ=37) cac‑aGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc > 1:201406/1‑141 (MQ=37) cac‑aGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 2:201406/141‑1 (MQ=37) cac‑aGGCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCTGTCGATGCCACCACCGCGCCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGc > 6:227317/1‑148 (MQ=255) ac‑aGGCGGTAATTTCGAGCAACTGACCCCGAGATCCGACCCCGGCTCAGA‑CCACGATAAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 1:240875/1‑148 (MQ=11) ggCGGTAATTTCGAGCAACTGACCCCGA‑ACCCGACACCGGCTCAGA‑CCACTATCAACGACTCGGTCGATGCCACCAAAGCGACCCTGACGCCGAGCCCGTCGGTCACCTAAGGAGTCGTAATCACCTACACCGTCACACTGAGCaa > 2:310346/1‑146 (MQ=11) gCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCt < 2:144487/149‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 6:192609/149‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 8:170301/149‑1 (MQ=34) tttCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCATCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGa > 3:383115/1‑149 (MQ=21) tttCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGa > 7:79677/1‑149 (MQ=34) ttCGAGCAAGTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 7:252604/109‑1 (MQ=17) gAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGTGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGcc > 2:228484/1‑149 (MQ=21) aGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 7:99764/149‑1 (MQ=34) aaCTGACCCCGA‑ATCCGACCCCGGCTCAGC‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 5:291594/1‑148 (MQ=21) aaCTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa > 7:344294/1‑126 (MQ=21) aaCTGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 8:344294/126‑1 (MQ=21) tGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc < 7:15764/149‑1 (MQ=38) tGACCCCGA‑ACCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGtga > 1:276683/1‑145 (MQ=11) aCCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc < 2:330624/147‑1 (MQ=38) ccGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc > 1:376899/1‑124 (MQ=35) ccGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc < 2:376899/124‑1 (MQ=35) ccGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAc < 5:254353/149‑1 (MQ=39) cGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 7:352029/1‑137 (MQ=34) cGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 8:352029/137‑1 (MQ=34) | GGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCA‑GCGTCACCATCGAGAACGCCAC‑AGGCGGTAATTTCGAGCAACTGACCCCGA‑ATCCGACCCCGGCTCAGA‑CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGT > NC_002947/196943‑197237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |