| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,179 | A→G | 9.8% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,179 | 0 | A | G | 9.8% | 512.5 / 33.0 | 193 | V895V (GTA→GTG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (90/84); new base G (9/10); total (99/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 198 total aligned reads displayed.
CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGT > NC_002947/197031‑197326 | tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt > 2:29891/1‑148 (MQ=255) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATc < 8:328893/149‑1 (MQ=255) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 3:378938/148‑1 (MQ=21) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc < 1:9342/149‑1 (MQ=255) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc > 4:190258/1‑148 (MQ=38) ctCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTa < 8:118373/148‑1 (MQ=37) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 3:174576/1‑148 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac < 1:395216/149‑1 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTacac < 6:309836/149‑1 (MQ=37) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTacac > 5:248968/1‑149 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGACTCAGACCCCGGCTCAGACGAGGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGGCGGTCGCCGGAGGCGGCGGAGTCGCCTACGcc > 4:151255/1‑149 (MQ=11) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGTGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAcc < 7:270690/149‑1 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAcc > 8:367992/1‑149 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 4:68731/1‑149 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 8:222723/1‑149 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 6:254353/1‑149 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGCCTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc > 7:151459/1‑149 (MQ=255) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 5:341921/149‑1 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 7:367992/149‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 8:193778/149‑1 (MQ=17) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAACGCGGCGTAATCACCTACACCGTGAcc > 4:115344/1‑149 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTaca < 7:138572/141‑1 (MQ=37) gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAccc > 7:102263/1‑149 (MQ=37) accGCCACAGGCGGAAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCCCAGCCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTT‑ACGGCGAGCCCGTCGGTCACCGTAGGCGGCGTAATCACCTACACCGTGACCCt < 8:173548/147‑1 (MQ=11) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:53028/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 5:162874/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 1:29891/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGTCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg < 5:286209/149‑1 (MQ=12) ccACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 1:158130/1‑148 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGc > 6:155945/1‑148 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCTGTCGATGCCACCACCGCGCCCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGc > 6:227317/1‑148 (MQ=255) ggCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGCACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCaa < 1:310346/147‑1 (MQ=255) ggCGGTAATTTCGAGCAACTGACCCCGAACCCGACACCGGCTCAGACCACTATCAACGACTCGGTCGATGCCACCAAAGCGACCCTG‑ACGCCGAGCCCGTCGGTCACCTAAGGAGTCGTAATCACCTACACCGTCACACTGAGCaa > 2:310346/1‑146 (MQ=11) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCt > 7:18485/1‑149 (MQ=34) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCt < 7:30611/149‑1 (MQ=34) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCt < 2:144487/149‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 6:192609/149‑1 (MQ=34) tAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc > 6:75329/1‑148 (MQ=34) aTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc > 1:244961/1‑146 (MQ=34) ttCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGCCCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCCCCTACCCCGTGACCCTGAGCAAGCCTGCCCAGAc > 8:116845/1‑149 (MQ=11) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 2:220279/149‑1 (MQ=34) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 7:99764/149‑1 (MQ=34) gCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg < 7:160528/149‑1 (MQ=34) gCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg > 1:177670/1‑149 (MQ=21) aaCTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa > 7:344294/1‑126 (MQ=21) tGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGCCCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATACTGCCCAGACGCCGGtga > 7:88171/1‑145 (MQ=2) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc < 2:330624/147‑1 (MQ=38) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAACGCGGCGTAATCACATACACCGTCACCCTGAGCAATCCTGCCAAGACGCCGGTAACCGt > 4:372081/1‑149 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 4:233134/1‑149 (MQ=39) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc < 2:376899/124‑1 (MQ=35) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAc > 2:230516/1‑149 (MQ=39) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAc < 5:254353/149‑1 (MQ=39) cGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAcc < 3:372081/149‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 8:352029/137‑1 (MQ=34) aTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTg > 8:155166/1‑149 (MQ=38) aTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTg < 3:193423/149‑1 (MQ=38) tCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGt > 3:388864/1‑149 (MQ=38) ccGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTc < 1:203046/149‑1 (MQ=37) cGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTc > 7:212466/1‑148 (MQ=37) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGAAATCACCTACACCCTGACCCTGACCAATCATGCCCAGACGCCGGTACCCTTGACCCTGTcc > 7:324984/1‑148 (MQ=11) cccGGCTCAGACCACAAACAACGACACGGTCGATGCCACCACCACGACCCTG‑ACTGCGAGCCCGTCGGTCACCGAAGCCGGCGTAATAACCTACACCGTGACCCTGAGCAATAATGCCAAGACCCCCGTCACAGTGACCATGTCCAACg > 2:353490/1‑149 (MQ=11) ggCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGcc < 8:79677/149‑1 (MQ=34) cTCCGACCCCGATCAACGAGTCGGTCTATGCCACCACCGCGTCCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAg < 8:343500/149‑1 (MQ=11) cTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAg < 5:315986/149‑1 (MQ=35) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGACCGTCGGTCACCGAAGGCGGCGTAATCACAAACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAAAGGCCAAGtca > 1:362312/1‑148 (MQ=11) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 5:241991/95‑1 (MQ=33) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa > 6:241991/1‑95 (MQ=33) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatca > 4:314881/1‑149 (MQ=40) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTg > 2:88905/1‑149 (MQ=255) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTCCCCAGACGCCGGTAACCGTGAACCTTTCCACCGGCCAGGTCATCACTg > 1:106225/1‑149 (MQ=255) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCACGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTg > 3:108867/1‑149 (MQ=255) cTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCg < 1:293285/149‑1 (MQ=255) ggTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCgg < 1:230516/147‑1 (MQ=255) gTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCa > 3:213705/1‑148 (MQ=255) gTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCa > 1:200726/1‑148 (MQ=255) tCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCaaa < 3:314881/149‑1 (MQ=255) gCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAAcc > 6:357874/1‑147 (MQ=255) ccaccaCCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCa < 3:188782/148‑1 (MQ=255) ccaccaCCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 4:388864/149‑1 (MQ=255) ccaccaCCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 1:380497/149‑1 (MQ=255) ccaccaCCGCGACCCTG‑ACGGCGAGCCCGGCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCATGTCATCACTGTTGAAGCCGGCAAAACCCa < 4:99362/148‑1 (MQ=255) caccacCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAgg > 6:248921/1‑149 (MQ=255) caccacCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGGTGAAGCCGGCAAAACCCAgg > 8:249872/1‑149 (MQ=255) accaccGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGt > 7:354359/1‑128 (MQ=255) aCCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa < 8:212466/149‑1 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 7:155166/148‑1 (MQ=255) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa > 8:91921/1‑149 (MQ=255) cGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGcc < 2:200726/149‑1 (MQ=255) gTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGcc > 6:382905/1‑148 (MQ=255) ggTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 5:382905/148‑1 (MQ=255) ggTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 4:108867/148‑1 (MQ=255) aacGAAGGCCGCTTAATCACCTACCCCGTCACCCTTAGCAATCCTTCCCCGACGCCGGGACCCGGGACCCTGGCCATCGGCCAGGTCATCTCTGTTGACTCCGGCAAAACCCAGGGCAGCGTCGTTTTCCAGTCCCCGGCCAATGTCGt < 8:142005/147‑1 (MQ=14) aCCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGt > 8:20637/1‑149 (MQ=39) cGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTc > 1:183112/1‑148 (MQ=39) gcggcgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaac < 7:91921/149‑1 (MQ=38) gTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGCCCCCGGCCAATGACGTCTACAACAACgg > 2:257820/1‑149 (MQ=37) gTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACgg > 7:227142/1‑149 (MQ=37) gTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACgg < 5:344146/149‑1 (MQ=37) aaTCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGt > 2:124432/1‑148 (MQ=35) aaTCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGCTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGt < 1:124432/148‑1 (MQ=25) | CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGT > NC_002947/197031‑197326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |