| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,185 | C→T | 8.6% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,185 | 0 | C | T | 8.6% | 503.5 / 28.7 | 187 | T897T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (87/82); new base T (8/8); total (97/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.18e-01 | |||||||||||
Only 100 of 190 total aligned reads displayed.
GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCG > NC_002947/197039‑197333 | gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa < 2:86827/149‑1 (MQ=17)ctCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTa < 8:118373/148‑1 (MQ=37) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac < 1:395216/149‑1 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTacac < 6:309836/149‑1 (MQ=37) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTacac > 5:248968/1‑149 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGACTCAGACCCCGGC‑TCAGACGAGGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGGCGGTCGCCGGAGGCGGCGGAGTCGCCTACGcc > 4:151255/1‑149 (MQ=11) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGTGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAcc < 7:270690/149‑1 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 3:179415/149‑1 (MQ=17) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAcc > 7:15508/1‑149 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 4:68731/1‑149 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 6:254353/1‑149 (MQ=37) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 4:170858/1‑149 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt < 2:342814/149‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 8:193778/149‑1 (MQ=17) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAACGCGGCGTAATCACCTACACCGTGAcc > 4:115344/1‑149 (MQ=37) accGCCACAGGCGGAAATTTCGAGCAACTGACCCCGAACCCGACCCCGGC‑CCAGCCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTT‑ACGGCGAGCCCGTCGGTCACCGTAGGCGGCGTAATCACCTACACCGTGACCCt < 8:173548/147‑1 (MQ=11) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 5:162874/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 1:168706/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 1:29891/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGTC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg < 5:286209/149‑1 (MQ=12) ccACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGc < 2:328344/149‑1 (MQ=37) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 2:201406/141‑1 (MQ=37) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGc > 5:398520/1‑148 (MQ=37) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGCTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCCCCTACACCGTGACCCTGAGc > 7:323539/1‑148 (MQ=255) aGGCGGTAATTTCGAGCATCTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGGCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc < 1:155298/149‑1 (MQ=25) ggCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGCACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCaa < 1:310346/147‑1 (MQ=255) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCt < 2:144487/149‑1 (MQ=34) aTTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc > 1:244961/1‑146 (MQ=34) tttCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCATCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGa > 3:383115/1‑149 (MQ=21) tttCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGa > 7:79677/1‑149 (MQ=34) ttCGAGCAACTGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGCCCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCCCCTACCCCGTGACCCTGAGCAAGCCTGCCCAGAc > 8:116845/1‑149 (MQ=11) gAGCAACTGACCCCGAATCCGACCCCGGCGTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACACTGAGCAATCCTGCCCAGACGc > 1:29637/1‑149 (MQ=255) gAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGTGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGcc > 2:228484/1‑149 (MQ=21) gCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg < 7:160528/149‑1 (MQ=34) aaCTGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa > 7:344294/1‑126 (MQ=21) aaCTGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 8:344294/126‑1 (MQ=21) aaCAGACCCCGAATCCGCCCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCCACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATAACCTACACCGTGACCCTCAGCAATCCTGCCCAGACGCCGGt > 7:142005/1‑148 (MQ=11) ttcacccGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc < 5:342086/145‑1 (MQ=38) tGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGCCCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATACTGCCCAGACGCCGGtga > 7:88171/1‑145 (MQ=2) tGACCCCGAACCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGtga > 1:276683/1‑145 (MQ=11) aCCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGt > 2:380497/1‑149 (MQ=39) aCCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAACGCGGCGTAATCACATACACCGTCACCCTGAGCAATCCTGCCAAGACGCCGGTAACCGt > 4:372081/1‑149 (MQ=255) cccGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 4:233134/1‑149 (MQ=39) ccGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAc < 5:254353/149‑1 (MQ=39) cGAATCCGCCCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAcc < 3:372081/149‑1 (MQ=255) aTCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTg > 8:155166/1‑149 (MQ=38) aTCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTg < 3:193423/149‑1 (MQ=38) ccGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTc < 1:203046/149‑1 (MQ=37) gACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTcc > 8:211642/1‑148 (MQ=37) ccGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGGccgttg > 6:229300/1‑144 (MQ=21) ggC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGcc < 8:79677/149‑1 (MQ=34) c‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAg < 5:315986/149‑1 (MQ=35) gACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtc > 6:359006/1‑148 (MQ=38) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcat > 8:33440/1‑149 (MQ=39) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGACCGTCGGTCACCGAAGGCGGCGTAATCACAAACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAAAGGCCAAGtca > 1:362312/1‑148 (MQ=11) ccACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcat > 6:217343/1‑148 (MQ=39) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 5:241991/95‑1 (MQ=33) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa > 6:241991/1‑95 (MQ=33) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatca > 2:293285/1‑149 (MQ=40) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatca > 4:314881/1‑149 (MQ=40) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTCCCCAGACGCCGGTAACCGTGAACCTTTCCACCGGCCAGGTCATCACTg > 1:106225/1‑149 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt < 7:211642/149‑1 (MQ=255) ggTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCgg < 1:230516/147‑1 (MQ=255) gTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCa > 3:213705/1‑148 (MQ=255) gTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCa > 1:200726/1‑148 (MQ=255) tCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCaaa < 3:314881/149‑1 (MQ=255) ccaccaCCGCGACCCTG‑ACGTCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 6:161545/149‑1 (MQ=255) ccaccaCCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCa < 3:188782/148‑1 (MQ=255) ccaccaCCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 4:388864/149‑1 (MQ=255) ccaccaCCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 1:380497/149‑1 (MQ=255) ccaccaCCGCGACCCTG‑ACGGCGAGCCCGGCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCATGTCATCACTGTTGAAGCCGGCAAAACCCa < 4:99362/148‑1 (MQ=255) caccacCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAgg > 6:248921/1‑149 (MQ=255) caccacCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAgg > 6:84446/1‑149 (MQ=255) caccacCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGGTGAAGCCGGCAAAACCCAgg > 8:249872/1‑149 (MQ=255) accaccGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGt > 7:354359/1‑128 (MQ=255) accaccGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGt < 8:354359/128‑1 (MQ=255) ccGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGc < 6:398520/149‑1 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 7:155166/148‑1 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 8:213167/148‑1 (MQ=255) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa > 8:91921/1‑149 (MQ=255) tCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCaa < 3:139170/149‑1 (MQ=255) ggTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCTGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 5:359006/148‑1 (MQ=255) ggTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 4:108867/148‑1 (MQ=255) aacGAAGGCCGCTTAATCACCTACCCCGTCACCCTTAGCAATCCTTCCCCGACGCCGGGACCCGGGACCCTGGCCATCGGCCAGGTCATCTCTGTTGACTCCGGCAAAACCCAGGGCAGCGTCGTTTTCCAGTCCCCGGCCAATGTCGt < 8:142005/147‑1 (MQ=14) aCCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGt > 8:20637/1‑149 (MQ=39) cGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTc > 1:183112/1‑148 (MQ=39) aGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTaca < 7:109356/149‑1 (MQ=39) gcggcgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaac < 7:91921/149‑1 (MQ=38) gtcgTAATCACCTACACCGTGACCCTTATAAATCCTGCCCAGACGCCGGTAACGGTGTCGCTGTCCAACTGCCTGGTCATCACTGTTGTAGCCGGCAAAACCCAGGGCTGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAcaacaa < 2:362312/147‑1 (MQ=11) gcgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACaacaac > 2:9269/1‑149 (MQ=37) gTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGCCCCCGGCCAATGACGTCTACAACAACgg > 2:257820/1‑149 (MQ=37) gTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACgg > 7:227142/1‑149 (MQ=37) aaTCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGt > 2:124432/1‑148 (MQ=35) aaTCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGCTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGt < 1:124432/148‑1 (MQ=25) aTCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTc < 8:227142/149‑1 (MQ=34) aTCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTc < 8:102263/149‑1 (MQ=34) tCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTc > 3:81678/1‑148 (MQ=34) tCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTc > 5:337016/1‑148 (MQ=34) aCCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGa < 7:33440/148‑1 (MQ=34) cTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACCGTTCGACCg > 2:304395/1‑149 (MQ=21) | GTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGC‑TCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTG‑ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCG > NC_002947/197039‑197333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |