| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 198,013 | C→T | 7.3% | I1173I (ATC→ATT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 198,013 | 0 | C | T | 7.3% | 196.9 / 3.7 | 69 | I1173I (ATC→ATT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (30/33); new base T (2/3); total (33/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.06e-01 | |||||||||||
CGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGCGACACCGTGACGATC > NC_002947/197865‑198160 | cGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGtcatc < 1:5785/149‑1 (MQ=255) gTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCTAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAAt < 8:230900/149‑1 (MQ=255) tAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATg < 6:255087/149‑1 (MQ=255) aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGa > 1:161347/1‑149 (MQ=255) aaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGAc < 5:263794/149‑1 (MQ=255) aaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACa < 6:122583/149‑1 (MQ=255) aGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATTGATGACAgtcga < 1:94945/149‑5 (MQ=255) aGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATTGATGACAgtcga < 1:88878/149‑5 (MQ=255) gCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGAt < 8:158278/149‑1 (MQ=255) gATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCAc < 2:171461/149‑1 (MQ=255) aTTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCAcc > 5:117818/1‑149 (MQ=255) tttCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCg > 2:295296/1‑149 (MQ=255) tCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGt < 8:236597/148‑1 (MQ=255) tCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGt < 6:117818/148‑1 (MQ=255) ccAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGCCCCCAGCCTCG‑ACTGTCATCACTGCCAGCATCGATACCGTCAGCGt > 6:320889/1‑147 (MQ=255) cccGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTg < 7:128350/149‑1 (MQ=255) cccGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTg > 5:26891/1‑149 (MQ=255) cccGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTg > 2:223888/1‑149 (MQ=255) cccGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTg > 1:78375/1‑149 (MQ=255) ccGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGt > 8:349615/1‑149 (MQ=255) aTGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAgca‑at < 2:161347/149‑1 (MQ=255) aCGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAgca‑atgg < 2:78375/148‑1 (MQ=255) aCGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAgca‑atgg > 3:137309/1‑148 (MQ=255) gTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATTGATGACAgtcgag < 7:291381/115‑6 (MQ=255) gTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATTGATGACAgtcgag > 8:291381/1‑110 (MQ=255) tCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAgca‑atggcaat < 5:320889/149‑1 (MQ=255) tCTACAACAACGGCTCGACCGGCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAgca‑atggcaat < 4:198956/149‑1 (MQ=255) acaacaACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAAtgt > 4:257730/1‑148 (MQ=255) ctacaacGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGa < 4:312131/147‑1 (MQ=255) caacaaCGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGa < 7:107354/149‑1 (MQ=255) aacaacGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGAc > 1:341313/1‑149 (MQ=255) acaacGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAAGCTTCGAACATCTGACT‑‑CCGAATCCGACCCCACCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCCCCGTAAGTATTGTCAGCA‑ATGGCAATGTGAc > 1:289221/1‑149 (MQ=255) ggCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACTAGGCGAATCCGCCCCCAGCCTCG‑ACTGTCATAAATGACAGCAACGATACCGTCACCGTAAGTATTGTAAGCA‑ATGGCAATGTGACCGaa > 1:112462/1‑149 (MQ=37) gCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGAc < 1:109084/149‑1 (MQ=255) gCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGAc < 7:101082/149‑1 (MQ=255) gCTCCACCGTCAGCGCCACCAACGCGACCGCCCCGCGCGGCAA‑CACCGCACCTCTGACC‑‑CCGACTCCGACCCCAGCCTCG‑CCCGTCACCAATCACAGCAGCGATACCGTCACCGTCAGCACTGTCAGCA‑ATGGCAATGTGACCGAacac < 4:137309/149‑1 (MQ=255) cTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGAc > 7:45479/1‑148 (MQ=255) tCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑GCTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGAc > 4:16959/1‑147 (MQ=255) gACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCATAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACcag > 7:235443/1‑148 (MQ=255) aCCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACcagca < 7:349615/149‑1 (MQ=255) aGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGccttc > 6:253800/1‑149 (MQ=255) tCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCttt < 6:26891/149‑1 (MQ=255) cATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACtg > 4:258038/1‑149 (MQ=255) cATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACtg > 6:45526/1‑149 (MQ=255) agagCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGaaa < 1:261689/149‑1 (MQ=255) agagCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGa > 8:225769/1‑147 (MQ=255) agagCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGGCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGCCCGAAGACCAGCAGCCTTCCTTTAGTGTGaaa > 6:359653/1‑149 (MQ=255) ccACGGGCGGCAA‑CTTCGAACATCTGGCT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGc > 4:187486/1‑149 (MQ=255) ccACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGc < 1:34438/149‑1 (MQ=255) ccACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGc < 4:375802/149‑1 (MQ=255) cACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGc > 5:96341/1‑148 (MQ=255) cACCGGCGGCAA‑ATTCGAACATCTGACT‑‑CCGAAACCGACCCCAGCCTCG‑ACTTTCATCAATGACATCATCGATACCGTCACCGTAATTATTGTCACCATATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGc < 1:295296/149‑1 (MQ=255) cGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCATAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTTTCACAGTaaaggaa < 8:235443/149‑6 (MQ=255) gcggcAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGgcg < 6:134806/149‑1 (MQ=255) gcAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTg < 8:45479/149‑1 (MQ=255) aa‑CTACGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGa < 8:348005/149‑1 (MQ=255) gAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGAccgtc < 5:45526/148‑1 (MQ=255) aCATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCCAAAGTATTGTCAGCA‑AAGGCAATGTGACCGAAGACCATCACCCTTCCTTTACTGTGAAAGTAATCCAGCCGCTGCAccgtacgt > 2:342128/1‑149 (MQ=255) aCT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGa < 3:258038/145‑1 (MQ=255) cT‑‑CCGAATCCGACCCCAGCCTCGAACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACgg > 7:57920/1‑148 (MQ=255) t‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGACAGGCGCTGGACCGTCCGTTGACGGTaa > 8:91924/1‑149 (MQ=255) cGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAAcc > 4:122088/1‑149 (MQ=255) gACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTc < 3:131528/147‑1 (MQ=255) gACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTc > 4:131528/1‑147 (MQ=255) cAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGc < 1:366568/149‑1 (MQ=255) cAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGc < 2:341313/149‑1 (MQ=255) tCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACAAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGCGacac > 1:338508/1‑149 (MQ=255) atgcTGTCATTGATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGCGACAcc > 1:188446/4‑149 (MQ=255) cTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGCGACACCGt > 4:1087/1‑148 (MQ=255) tGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGCGACACCGTGa > 2:233649/1‑149 (MQ=255) tcatcaATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGCGACACCGTGAc > 5:264286/1‑148 (MQ=255) atcaATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGCGACACCGTGACGAt > 2:82733/1‑149 (MQ=255) tcaATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCTGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGCGACACCGTGACGATc < 2:289221/149‑1 (MQ=255) | CGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAA‑CTTCGAACATCTGACT‑‑CCGAATCCGACCCCAGCCTCG‑ACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCA‑ATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAAGCCAGGCGCTGGACCGTCCGTTGACGGTAACCCTGTCTAACGGCGACACCGTGACGATC > NC_002947/197865‑198160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |