| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,772,156 | G→C | 6.0% | intergenic (+75/‑232) | PP_3331 → / → PP_3332 | membrane protein/cytochrome c‑type protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,772,156 | 0 | G | C | 6.0% | 242.0 / 4.0 | 78 | intergenic (+75/‑232) | PP_3331/PP_3332 | membrane protein/cytochrome c‑type protein |
| Reads supporting (aligned to +/- strand): ref base G (32/40); new base C (3/2); total (35/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
TGGTGGTTTCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGACCGGTAGATGAAGCCCT > NC_002947/3772008‑3772297 | tggtggTTTCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATg > 7:7406/1‑149 (MQ=255) gtggtTTCACTCAGCGGCGTCGTACTAGGCTGGAGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGATTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATgag > 2:263177/1‑147 (MQ=255) tttCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGcccc < 6:43598/149‑1 (MQ=255) ttCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGTGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCg > 1:72946/1‑149 (MQ=255) tCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTTGGAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCg > 1:314546/1‑149 (MQ=255) cACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCgg < 4:8059/148‑1 (MQ=255) aCTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCt < 2:206653/149‑1 (MQ=255) tCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTGAAGGTCTCAAAAAACAAAAG‑‑CCGGGACGTTAATCCGCCCCGGAtt > 1:132205/1‑149 (MQ=255) tCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCttt > 6:37950/1‑149 (MQ=255) aGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCtttt < 8:144741/148‑1 (MQ=255) aGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCtttt < 4:277159/148‑1 (MQ=255) aGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCtttt < 4:9873/148‑1 (MQ=255) aGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCtt > 5:227518/1‑146 (MQ=255) aGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCtt < 6:227518/146‑1 (MQ=255) aGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTtttg > 4:153664/1‑149 (MQ=255) gcggcgTCGTACTAGTCTGGAGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCATCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTtttgt < 3:64069/149‑1 (MQ=255) ctgcgTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTtttgtt < 8:255455/147‑1 (MQ=255) cggcgTCGTACTTGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCTCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCCGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTtttgtt < 8:255453/149‑1 (MQ=255) cggcgTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCGCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGTGACGGTAATGCGCCCCGGCTtttgtt < 5:30643/149‑1 (MQ=255) gtcgtACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAg < 2:369680/149‑1 (MQ=255) gtACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGGCGCATTACCGTCCCGGCTtttgttttttca < 1:230568/148‑6 (MQ=37) tACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGTGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGa < 2:72946/149‑1 (MQ=255) tACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CAGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGa > 1:160071/1‑149 (MQ=255) aCTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTCTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGAt > 7:196487/1‑149 (MQ=255) cTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGAt < 5:37950/148‑1 (MQ=255) gCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGaaaa > 2:111704/1‑149 (MQ=255) gCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTtttgtt < 4:93802/131‑1 (MQ=255) gCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTtttgtt > 3:93802/1‑131 (MQ=255) gCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAAccc < 4:20831/148‑1 (MQ=255) cGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTg > 6:326970/1‑149 (MQ=255) cGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATACGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTg < 2:376772/149‑1 (MQ=255) gAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACTAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAg < 1:179749/133‑1 (MQ=255) gAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACTAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAg > 2:179749/1‑133 (MQ=255) aaGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGc > 5:211375/1‑148 (MQ=255) tACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAagag > 6:260396/1‑149 (MQ=255) cGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGt > 3:41962/1‑148 (MQ=255) gCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTaa < 5:260396/149‑1 (MQ=255) gCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTaa < 8:7406/149‑1 (MQ=255) aaTGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAaca > 8:351511/1‑149 (MQ=255) aTGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAGTTCCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTaaaa < 1:111704/148‑1 (MQ=255) ccGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGa < 3:153664/149‑1 (MQ=255) cGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGAt > 3:179644/1‑149 (MQ=255) ttCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTc > 4:85366/1‑148 (MQ=255) gcgGTT‑GAGTCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGGCCCGGCTTTTGTTTGAGCGGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAAc < 4:27614/148‑1 (MQ=255) aGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCAc < 4:41962/148‑1 (MQ=255) aGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACg > 5:167040/1‑149 (MQ=255) gCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACgg > 1:230118/1‑149 (MQ=255) ctcctTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAGAACACCGGATCAGCTTCAACGTAGCACGGCa > 6:182768/1‑149 (MQ=255) tcctTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCAc > 1:383716/1‑149 (MQ=255) ctTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCAc < 5:177296/147‑1 (MQ=255) ctTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCt < 5:326970/149‑1 (MQ=255) gtgtTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAg > 5:105854/1‑149 (MQ=255) tCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAgccgc < 4:179644/148‑1 (MQ=255) cGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTg < 1:210945/139‑1 (MQ=255) cGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTg > 2:210945/1‑139 (MQ=255) cAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGTTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCTGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCAcc < 2:140694/149‑1 (MQ=255) aGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGt < 6:211375/149‑1 (MQ=255) cGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGGTTTTGTTTGAGCCGATGAAAACCGTGCCAAGAGTAAAACACCGGATCCGCTTCAACGTAGCACGGCACATGCAAGCCGCCACCCTGCGACGGTTc > 1:83776/1‑149 (MQ=255) cGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTc < 3:85366/149‑1 (MQ=255) cGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTc < 2:230118/149‑1 (MQ=255) aGTGCCGCTG‑ATCACACAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGATATTGTTTCAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGAAACTGCAAGCAGCAACACTGCGACGGTTcgc > 8:267421/1‑149 (MQ=255) tGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGATGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTcgccg > 8:333099/1‑149 (MQ=255) tGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTcgccg < 2:160071/149‑1 (MQ=255) aCTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTgccag < 8:116121/149‑1 (MQ=255) cTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTgccagc > 3:186847/1‑149 (MQ=255) gAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTgccagc > 5:365204/1‑147 (MQ=255) ctcaaaCAAAAG‑‑CCGGGGCGCATTACCGTCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCg < 6:138576/120‑1 (MQ=25) ctcaaaCAAAAG‑‑CCGGGGCGCATTACCGTCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCg > 5:138576/4‑123 (MQ=25) aaaaCAAACG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGc < 4:75537/83‑1 (MQ=255) aaaaCAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGc > 3:75537/1‑83 (MQ=255) aaaCAAAAG‑‑CCGGGGCGCATTACCGTCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGAcc > 3:252491/1‑149 (MQ=38) aaaaG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGACCGGTa < 8:196487/149‑1 (MQ=255) aG‑‑CCGGTACGGTAATGCGCCCCGGCTTTTGTTTTAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGTATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGACCGGTAGAt < 1:263177/149‑1 (MQ=255) cGGGATGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGACCGGTAGATGaa < 7:333099/149‑1 (MQ=255) cGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCCCCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGAGCGGTAGATg > 4:248099/1‑147 (MQ=255) ggACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGACCGGTAGa < 3:203074/143‑1 (MQ=255) ggACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGACCGGTAGa > 4:203074/1‑143 (MQ=255) cGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGGTCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGACCGGTAGATGAAGCCCt > 3:356045/1‑149 (MQ=255) cGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCTCACCCTGCCAGCCAGACCGGTAGATGAAGCCCt < 2:314546/149‑1 (MQ=255) cGGTAATGCGCCCCGGATTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGACCGGTAGATGAAGCCCt < 2:383716/149‑1 (MQ=255) | TGGTGGTTTCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTT‑GAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTG‑ATCACTGAAAAAACAAAAG‑‑CCGGGACGGTAATGCGCCCCGGCTTTTGTTTGAGCCGATGAAAACCCTGCCAAGAGTAAAACACCGGATCAGCTTCAACGTAGCACGGCACCTGCAAGCCGCCACCCTGCGACGGTTCGCCGCACCCTGCCAGCCAGACCGGTAGATGAAGCCCT > NC_002947/3772008‑3772297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |