Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,142,681 | A→G | 8.9% | N272D (AAT→GAT) | PP_3646 → | aldehyde dehydrogenase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,142,681 | 0 | A | G | 8.9% | 151.0 / 3.9 | 56 | N272D (AAT→GAT) | PP_3646 | aldehyde dehydrogenase family protein |
Reads supporting (aligned to +/- strand): ref base A (31/20); new base G (2/3); total (33/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.92e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01 |
CGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGCGCATCCGCATCGGCAACCCGCAGGAC > NC_002947/4142537‑4142827 | cgcAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATg < 1:19590/148‑1 (MQ=255) aaGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATTGATGgcgc < 4:71317/149‑1 (MQ=255) ttCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCgg > 8:82914/1‑149 (MQ=255) cACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCgg < 6:224948/147‑1 (MQ=255) cggcggTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATc > 6:59412/1‑148 (MQ=255) cggcggTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATc > 6:185105/1‑148 (MQ=255) gTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCACTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGcc < 8:76033/149‑1 (MQ=255) gccACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTc > 2:189711/1‑149 (MQ=255) ccACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTcc > 7:7323/1‑149 (MQ=255) ccgccACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCa > 1:74836/1‑147 (MQ=255) aCGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCAGCGTCCGGGCAAAGCTGc > 4:98469/1‑149 (MQ=255) gTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGc < 2:137722/149‑1 (MQ=255) cGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCGAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTCCGTGGCCgg > 3:51753/1‑149 (MQ=255) gcagcaGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGc > 6:155399/1‑149 (MQ=255) cagcGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGGCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTcgc < 3:233445/149‑1 (MQ=255) gCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGa > 2:320848/1‑149 (MQ=255) gCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGa < 3:341870/149‑1 (MQ=255) cAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGAt > 3:38687/1‑148 (MQ=255) tGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATc > 2:128768/1‑149 (MQ=255) cTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTcga < 8:7323/149‑1 (MQ=255) gAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTcgac < 2:133271/147‑1 (MQ=255) gAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTcgac > 8:52950/1‑147 (MQ=255) aCTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGt < 5:155399/149‑1 (MQ=255) aCTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGt > 4:332229/1‑149 (MQ=255) cTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGtt < 5:161398/149‑1 (MQ=255) ggcggcAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTt‑c < 1:189711/147‑1 (MQ=255) gcggcAAGTCGCCGAACATCATCTTCGCCGACGCTGACCTGGACAGCGCCATCAATGGCGCCGTGGCCTGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTt‑cgtc < 1:160998/149‑1 (MQ=255) cggcAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTt‑cgtc > 4:160244/1‑148 (MQ=255) ggcAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTt‑cgtc > 3:150715/1‑147 (MQ=255) cAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAgc < 5:185105/149‑1 (MQ=255) gTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGcc > 8:150910/1‑149 (MQ=255) gTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGACATCAATGGCGACGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGcc > 5:181270/1‑149 (MQ=255) tCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCt > 6:114843/1‑149 (MQ=255) ccGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGAt > 6:115030/1‑149 (MQ=255) cGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGAtt > 5:242530/1‑149 (MQ=255) cGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGAtt > 8:368975/1‑149 (MQ=255) tcatcTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCAGCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGCGTT‑CGTCGAGCGCCTGATTGCCcgc < 5:272059/149‑1 (MQ=255) catcTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCcgcg > 7:170300/1‑149 (MQ=255) atcTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCgcgc > 2:306015/1‑149 (MQ=255) cTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGcc > 6:174989/1‑148 (MQ=255) gccgacgccgacCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAgcg > 7:114420/1‑149 (MQ=255) gccgacgccgacCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAgc < 5:174989/148‑1 (MQ=255) cgacgccgacCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGcgca > 3:248199/1‑149 (MQ=255) cgccgacCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGcgcatcc < 6:242530/149‑1 (MQ=255) gacCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGcgcatccgcat < 4:248199/149‑1 (MQ=255) acCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGcgcatccgcatc < 1:320848/149‑1 (MQ=255) cTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGCGCATCCGCATCgg < 1:168355/149‑1 (MQ=255) cTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGCGCATCCGCATCgg > 3:115936/1‑149 (MQ=255) ggcgcCATTGATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTTCCGTCGAGCGCCTGATTGCCCGCGCCAAGcgcatc < 1:252001/135‑1 (MQ=255) ggcgcCATTGATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTTCCGTCGAGCGCCTGATTGCCCGCGCCAAGcgcatc < 1:246568/135‑1 (MQ=255) ggcgcCATTGATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGcgcatc > 2:252001/2‑135 (MQ=255) ggcgcCATTGATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGcgcatc > 2:246568/2‑135 (MQ=255) aGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGCGCATCCGCATCGGCAAccc < 3:160244/149‑1 (MQ=255) cgcCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGCGCATCCGCATCGGCAACCCg > 7:323983/1‑148 (MQ=255) cgcCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGCGCATCCGCATCGGCAACCCg > 6:187811/1‑148 (MQ=255) tCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGCGCATCCGCATCGGCAACCCGCAGgac > 6:158682/1‑149 (MQ=255) | CGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCTGGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTATGCCGCGTCCGGGCAAAGCTGCGTGGCCGGCTCGCGCCTGCTGGTGCAGGATGAAATCTTCGACGAGTT‑CGTCGAGCGCCTGATTGCCCGCGCCAAGCGCATCCGCATCGGCAACCCGCAGGAC > NC_002947/4142537‑4142827 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |