| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 39,490 | C→A | 5.2% | V73V (GTC→GTA) | PP_0036 → | transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 39,490 | 0 | C | A | 5.2% | 235.3 / 2.0 | 76 | V73V (GTC→GTA) | PP_0036 | transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (35/37); new base A (2/2); total (37/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.88e-01 | |||||||||||
CAATTGATGATCAGCTGGCCGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCATCGCGATCACAGAGCCAGTGCTGAACG > NC_002947/39342‑39638 | cAATTGATGATCAGCTGGCCGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTc < 2:343857/149‑1 (MQ=255) aTTGATGATCAGCTGGCCGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTa > 2:54042/1‑149 (MQ=255) tCAGCTGGCCGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAacac < 4:312442/148‑1 (MQ=255) tCAGCTGGCCGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAacac > 8:361891/1‑148 (MQ=255) gCTGGCCGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTAGACAAacacggga < 1:380762/149‑5 (MQ=255) gCTGGCCGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTCGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTAGACAAacacggga < 5:378942/149‑5 (MQ=255) cTGGCCGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACAcaacaa < 5:38419/149‑1 (MQ=255) cTGGCCGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACAcaacaa < 4:197300/149‑1 (MQ=255) ccGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGTG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCtt < 1:305750/149‑1 (MQ=255) cGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTg > 2:90958/1‑149 (MQ=255) tAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACAGGGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGc > 1:273884/1‑149 (MQ=255) tAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGcc > 6:384243/1‑149 (MQ=255) agagTGTCTCGCCACAGCACGATCTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGccc < 4:246798/149‑1 (MQ=255) agTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCt > 7:87081/1‑148 (MQ=255) ttCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAATCTTGCCCTGAccc < 5:372965/148‑1 (MQ=255) gCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGca > 6:189931/1‑148 (MQ=255) gCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGca > 8:263333/1‑148 (MQ=255) gCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGc > 5:353767/1‑147 (MQ=255) cACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGc > 4:312362/1‑146 (MQ=255) aCGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCgaga > 4:198705/1‑149 (MQ=255) aCGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTACCGTGTTTTTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCga > 2:52138/1‑147 (MQ=255) ccAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAg < 1:54042/148‑1 (MQ=255) ccAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGc < 4:387481/149‑1 (MQ=255) aGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCa > 1:12184/1‑149 (MQ=255) cAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTAcc > 7:278513/1‑149 (MQ=255) cAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCATGACCCGCACAGGCGAGAGGGTCAGCCATTAcc > 5:257190/1‑149 (MQ=255) aaaCA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCt < 5:271118/149‑1 (MQ=255) aaCA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTACCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCCCACAGCCgaga > 2:294612/1‑132 (MQ=255) aCA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCtgt < 3:312362/149‑1 (MQ=255) aCA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCtgt < 8:222333/149‑1 (MQ=255) a‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGc < 8:87081/149‑1 (MQ=255) a‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGc < 6:353767/149‑1 (MQ=255) ggCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGcc < 4:136252/149‑1 (MQ=255) gCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCa < 5:384243/149‑1 (MQ=255) gCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCa < 1:352688/149‑1 (MQ=255) gCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCATGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGc > 6:48985/1‑144 (MQ=255) gCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCATGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGc < 5:48985/144‑1 (MQ=255) cccGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGctc > 2:55492/1‑149 (MQ=255) ccGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGctct > 5:198261/1‑149 (MQ=255) cGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCtt > 1:326891/1‑149 (MQ=255) cGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAAAGCTTGGAG‑ATACTGTAAGAGCACATTGGTGCTCCCGTGTTTGGCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGTGTCAGCCATTACCTGTGCCAGCTCtt < 4:334282/149‑1 (MQ=255) cTCAATGTGCGAGTGGTAGGCCTGCGGAAACTCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGcc < 1:345806/124‑1 (MQ=255) cTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGcc > 7:49340/1‑148 (MQ=255) aaTGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAGAAAAATGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTCCAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGcc > 1:267435/1‑146 (MQ=255) tgtgCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACg > 6:33909/1‑149 (MQ=255) ccAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCt < 2:218228/149‑1 (MQ=255) cAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCtt < 5:189931/149‑1 (MQ=255) tAGGCCTGCGTAAACGCTTGTAG‑AAACTGTAAGAGCAAATTGGTGCTCCCGTGTTTGTCTACAAACAAAACAAGCTTGCCCTGACCCGCACAGGCGATAGTGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAg < 1:90958/149‑1 (MQ=255) ggCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGt < 7:263333/148‑1 (MQ=255) gCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTcc > 3:226265/1‑149 (MQ=255) gCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTcc > 3:305837/1‑149 (MQ=255) cTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCga < 4:91313/92‑1 (MQ=255) cTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCga > 3:91313/1‑92 (MQ=255) cTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAg > 3:364705/1‑117 (MQ=255) cTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAg < 4:364705/117‑1 (MQ=255) cTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGcc < 5:240781/136‑1 (MQ=255) cTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGcc > 6:240781/1‑136 (MQ=255) cTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCgg > 1:233645/1‑149 (MQ=255) cgattcTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGaaaa < 7:284595/144‑1 (MQ=255) aaaCGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGaaaa < 1:55492/149‑1 (MQ=255) aaCGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAg < 8:49340/149‑1 (MQ=255) ggAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑Gt < 2:12184/147‑1 (MQ=255) g‑aAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCa < 4:305837/149‑1 (MQ=255) aaCTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAgg < 2:326891/149‑1 (MQ=255) agagCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCa > 5:126997/1‑149 (MQ=255) gagCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCAt > 3:171504/1‑149 (MQ=255) agCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCATc < 2:273884/149‑1 (MQ=255) gCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCATcg > 8:28538/1‑149 (MQ=255) cacaTTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCATcgc > 7:138299/1‑149 (MQ=255) ttGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCATCGCGATc < 7:28538/149‑1 (MQ=255) ggTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCACTGACCCGCACAGGCGAGAGGTTCAGCCATTACCTGTGCCAGATCTTCGGCCCAGACGGACTAGGCAAGACCGGAGAAAAGGAA‑GTCCCCAGGCGTACAATcgataaca > 5:32537/1‑142 (MQ=255) cTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGGCCAGACGGCCTTGGCAAGTCCGGTGAAATGGAA‑GTCCCCAGGCTTACCATCGCGATCACaga < 4:226265/148‑1 (MQ=255) gttgtgtTTGTAGACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCATCGCGATCACAGAGc > 1:49516/4‑148 (MQ=255) gttgtgtTTGTAGACAAACACAACAAGCTTGCCCTGACCCGCACACGCGAGAGGGTCAGCAATTAACAGTGACACATCTTCGGCCCAGACGGCCTTGCCAAGGAAGAAGAAAAGGAA‑GTCACCGGGCATACGATCGCGATCAgagaca > 8:315628/4‑146 (MQ=255) gtgtTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAATGTCCCCAGGCTTACCATCGCGATCACAGAGCCAg < 1:52138/149‑1 (MQ=255) tttGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCATCGCGATCACAGAGCCAGTGc < 8:278513/148‑1 (MQ=255) tCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCAATTACCTGTGCCAGCTCTTCGGCCCAGACGGACTTGGCAAGTACGGTGAAAAGGAA‑GTCCCCAGGCTTACAATCGAGAt > 3:227087/1‑130 (MQ=255) cTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCATCGCGATCACAGAGCCAGTGCTGAACg > 8:193001/1‑149 (MQ=255) | CAATTGATGATCAGCTGGCCGTAGAGTTTTTCGCAACAGCACGTTGTGCCAGTTTCAAACA‑GGCTGCCCGAGGGCTCAATGTGCCAGTGGTAGGCCTGCGGAAACGCTTGGAG‑AAACTGGAAGAGCACATTGGTGCTCCCGTGTTTGTCTACAAACACAACAAGCTTGCCCTGACCCGCACAGGCGAGAGGGTCAGCCATTACCTGTGCCAGCTCTTCGGCCCAGACGGCCTTGGCAAGTCCGGTGAAAAGGAA‑GTCCCCAGGCTTACCATCGCGATCACAGAGCCAGTGCTGAACG > NC_002947/39342‑39638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |