Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,593,713 | T→A | 11.1% | intergenic (+19/+280) | mccA → / ← PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,593,713 | 0 | T | A | 11.1% | 143.4 / 8.7 | 54 | intergenic (+19/+280) | mccA/PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base T (23/25); new base A (3/3); total (26/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.44e-01 |
TTGGTACTGGAGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTA > NC_002947/4593566‑4593857 | ttGGTACTGGAGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCttt > 6:266404/1‑149 (MQ=255) gTACTGGAGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCg < 5:216437/149‑1 (MQ=255) gTACTGGAGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCg < 3:98665/149‑1 (MQ=255) gTACTGGAGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCg > 5:69254/1‑149 (MQ=255) gTACTGGAGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCg < 3:120489/149‑1 (MQ=255) tACTGGAGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCgg > 5:97361/1‑149 (MQ=255) tGGAGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCAAAGCGGcc > 4:30847/1‑148 (MQ=255) gAGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGccc < 3:329095/147‑1 (MQ=255) aGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCAAAGCGGCCCtcc < 8:174848/149‑3 (MQ=255) aTGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCaa < 6:340011/149‑1 (MQ=255) aTGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCAAAGCGGcc < 6:270547/140‑1 (MQ=255) aTGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCAAAGCGGcc > 5:270547/1‑140 (MQ=255) aTGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCAAAGCGGCCCtccggcac < 3:30847/149‑8 (MQ=255) gAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAaca > 5:376685/1‑149 (MQ=255) aGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAAcaca < 5:31295/149‑1 (MQ=255) tGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAg < 5:63235/148‑1 (MQ=255) ggAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGgc > 7:83469/1‑149 (MQ=255) gCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGgccgc > 5:373060/1‑149 (MQ=255) cacaGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTTCGGCCCTAACGCAACACAAGgccgcc > 7:147201/1‑149 (MQ=255) cATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCAGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTg > 5:47169/1‑148 (MQ=255) cctcATGACTGCTCGGTGAAGGCGCTGTTTTGCCTGGAGGGGGTTATGGTCAGCGAAGGGAGTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGt < 2:236720/146‑1 (MQ=255) ccgcATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGt < 8:83469/149‑1 (MQ=255) gctcGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGt < 5:266404/146‑1 (MQ=255) gCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGt > 6:42529/1‑149 (MQ=255) cACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGtt > 4:19183/1‑149 (MQ=255) aCGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGttt < 3:52058/149‑1 (MQ=255) aCGGTGAAGGCGCTGTTTTGCCTGGAGGGGGAAATGGACCGCGAAGGGAATTTGCTGGGGGAAGTGGTGTATTAACGTTCCCGGAGGCCCGATTTCCGCCCAAAACCAAACACAAGGCCGCCCC‑GCAACACGCCCTAAGGACCGGGtt > 4:312549/1‑148 (MQ=255) gcTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAg > 4:339301/1‑149 (MQ=255) cTGTTTTGCCTGGAGGGGGATATCGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAgg < 1:338195/149‑1 (MQ=255) ttttGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAgggc < 3:339301/148‑1 (MQ=255) ttGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAgggccgg > 7:183640/1‑149 (MQ=255) cTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCct > 2:58097/1‑149 (MQ=255) gcaGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCAGGAGGGCCGATTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTAACCGCGAAAGGGCCGGGCctgc > 7:171504/3‑149 (MQ=255) ggggATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGc < 6:69254/149‑1 (MQ=255) atatGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAAt < 5:42529/149‑1 (MQ=255) atatGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAAt < 3:19183/149‑1 (MQ=255) tCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtctc < 4:111457/146‑1 (MQ=255) tCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtctc > 3:111457/1‑146 (MQ=255) aGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑ccc > 7:154591/1‑149 (MQ=255) cGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACACGCGAAAGGGCCGGGCCTGCTGGCCAAACTCTA‑CCCGt > 3:287867/1‑149 (MQ=255) gACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCa > 3:25388/1‑149 (MQ=255) gACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCa > 7:202810/1‑149 (MQ=255) tgCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGt < 4:256761/148‑1 (MQ=255) tgCTGGTCGAACTGGTGGAATAACGGTGCCAGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGtt < 6:47169/149‑1 (MQ=255) gCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTg < 8:147201/149‑1 (MQ=255) aaCTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCCAAAGGGCCGGGCCTGCTGGCCAAGCGCTA‑CCCTGCGCTCACCGTTgccgcgcc > 6:122525/1‑145 (MQ=37) tAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTcgc < 6:97361/149‑1 (MQ=255) tAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTcgc < 8:183640/149‑1 (MQ=255) aCGGTGCCGGAGGGCCGCTTTGCGGCCCTAAGGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGTCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCgg < 8:171504/149‑1 (MQ=255) cGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCgg < 1:58097/149‑1 (MQ=255) gttaGGGCCGCAAAGCGGCCCTCACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAcc > 2:120450/4‑149 (MQ=21) ggAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAccc > 2:78158/1‑149 (MQ=255) ggCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCt < 8:202810/148‑1 (MQ=255) ccGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc > 2:41686/1‑148 (MQ=255) cGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTa > 8:34930/1‑149 (MQ=255) | TTGGTACTGGAGGCCATGAAGATGGAGCACAGCATTCGTGCGCCGCATGCCGGCACGGTGAAGGCGCTGTTTTGCCTGGAGGGGGATATGGTCAGCGAAGGGACTGTGCTGGTCGAACTGGTGGAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACA‑GCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTA‑CCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTA > NC_002947/4593566‑4593857 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |