| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,715,625 | A→T | 24.9% | M286L (ATG→TTG) | PP_4173 → | two‑component system sensor histidine kinase/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,715,625 | 0 | A | T | 24.9% | 140.2 / 45.2 | 80 | M286L (ATG→TTG) | PP_4173 | two‑component system sensor histidine kinase/response regulator |
| Reads supporting (aligned to +/- strand): ref base A (31/29); new base T (9/11); total (40/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
CTGGAGCAGGCCAGCGATGAACAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACGCGCTGCGCTGCAGCTGGAGCA > NC_002947/4715478‑4715773 | cTGGAGCAGGCCAGCGATGAACAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CAt < 1:11009/149‑1 (MQ=255) ggCCAGCGATGAACAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAAc < 3:155454/149‑1 (MQ=255) gCCAGCGATGAACAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAAct > 4:265369/1‑149 (MQ=255) cAGCGATGAACAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAActgc < 5:305017/149‑1 (MQ=255) aGCGATGAACAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAActgct < 2:134389/149‑1 (MQ=255) gCGATGAACAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAActgctg > 8:183782/1‑149 (MQ=255) aTGAACAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGaa < 1:255112/149‑1 (MQ=255) tGAACAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGaaa < 3:100934/149‑1 (MQ=255) aaCAGAAGCAGGCCATCGCCGAACTTATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGaaa < 7:325164/147‑1 (MQ=255) aaCAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCAACCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGaaa > 8:325164/1‑147 (MQ=255) cAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACcac > 6:73864/1‑149 (MQ=255) cAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCt > 7:372662/1‑149 (MQ=255) gCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAg < 1:313895/149‑1 (MQ=255) cATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGT‑CATGCTGCAACTGCTGGAAACCACACCg > 8:302848/1‑142 (MQ=255) cATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGGTCATGCTGCAACTGCTGGAAACCacac < 1:204048/141‑1 (MQ=255) cATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCacac > 2:204048/1‑140 (MQ=255) cATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCg < 7:302848/142‑1 (MQ=255) gtgCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGt < 7:101902/147‑1 (MQ=255) cGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGt > 6:29568/1‑148 (MQ=255) cGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGt > 6:24024/1‑148 (MQ=255) aCTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAgg < 6:356297/149‑1 (MQ=255) aTCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGa > 1:368682/1‑149 (MQ=255) aTCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCg < 5:24024/148‑1 (MQ=255) aTCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGAGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCg < 5:29568/148‑1 (MQ=255) tCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGAt < 7:183782/149‑1 (MQ=255) aGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTac < 8:122143/149‑1 (MQ=255) aGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTa > 3:156701/1‑148 (MQ=255) ggCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTaca < 7:55181/149‑1 (MQ=255) ccGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACgg < 6:222149/149‑1 (MQ=255) gcgAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGaa < 5:90664/131‑1 (MQ=255) gcgAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGaa > 6:90664/1‑131 (MQ=255) gCCGGACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAg > 5:196694/1‑149 (MQ=255) gCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAg > 4:14806/1‑149 (MQ=255) ccGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGc < 3:265369/149‑1 (MQ=255) cGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTac < 3:319245/133‑1 (MQ=255) cGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTac > 4:319245/1‑133 (MQ=255) aCAGGCCAACCGTGCCAAATAGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCTAGt > 6:22295/1‑149 (MQ=255) gCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCAc > 6:92218/1‑149 (MQ=255) gCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAActgct > 8:8940/1‑89 (MQ=255) gCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAActgct < 7:8940/89‑1 (MQ=255) cAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCg > 6:4218/1‑149 (MQ=255) aaCCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCATCGAGTCCACCgg > 2:301756/1‑149 (MQ=255) aaCCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGc > 4:204951/1‑138 (MQ=255) aaCCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGc < 3:204951/138‑1 (MQ=255) aaCCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCgg < 6:84386/149‑1 (MQ=255) cAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGc > 3:228062/1‑149 (MQ=255) ggATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAg < 2:270319/148‑1 (MQ=255) gATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGACCACCGGGCATTTGCTCAAGGt > 3:23793/1‑149 (MQ=255) ccTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGtcatc < 2:368682/148‑1 (MQ=255) gCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAAc < 3:14806/147‑1 (MQ=255) gatgatGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACa > 5:255124/1‑149 (MQ=255) atgaGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCt > 6:62581/1‑149 (MQ=255) gaGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTc > 2:137859/1‑148 (MQ=255) aGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGa < 6:255124/149‑1 (MQ=255) gCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGAt > 8:326636/1‑149 (MQ=255) gCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGAt > 4:66323/1‑149 (MQ=255) ccATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGAtt > 8:16738/1‑149 (MQ=255) aGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTc < 5:22295/148‑1 (MQ=255) gTTGCGCACCCCGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTcgc < 7:326636/149‑1 (MQ=255) gTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTcgc < 1:137859/149‑1 (MQ=255) gTTGCGCACCCCCATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTcgc < 2:317801/149‑1 (MQ=255) ttGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTcgcg > 1:226210/1‑149 (MQ=255) ttGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTcgcg < 5:4218/149‑1 (MQ=255) cccGATGAATGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAAc > 3:278792/1‑149 (MQ=255) cccGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCCACGCCAGCCTCGATTTTTc > 4:88745/1‑138 (MQ=255) cccGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTc < 3:88745/138‑1 (MQ=255) gATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAAcgcg > 2:180212/1‑149 (MQ=255) aaTGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACgcgctg < 5:92218/148‑1 (MQ=255) aTGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACgcgctgcg < 5:73864/149‑1 (MQ=255) tGGCGTGCTGGG‑CTTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACgcgctgcgc < 5:62581/149‑1 (MQ=255) tGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACAGCCTCGATTTTTCGCGCATCGAACgcgctgcgc > 4:279797/1‑149 (MQ=255) ggCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACgcgctgcgct > 2:265238/1‑149 (MQ=255) gTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACGcgctgcgctg > 8:374245/1‑147 (MQ=255) tGCTGGG‑CATGCTGCAACTGCTGGAAACCACCCCGCTGAGCAGTGAACAGGCCGGTTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACGCGCTGCGCTGCAg < 6:364623/149‑1 (MQ=255) tGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGtcat > 7:305372/1‑103 (MQ=255) tGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGtcat < 8:305372/103‑1 (MQ=255) tGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACGCGCTGCGCTGCAGCTg > 5:172137/1‑149 (MQ=255) gg‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACGAGCTGCGCTGCAGCTg > 2:375508/1‑147 (MQ=255) g‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACGCGCTGCGCTGCAGCTGGAg < 4:156701/149‑1 (MQ=255) cATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACGCGCTGCGCTGCAGCTGGAg > 2:347371/1‑148 (MQ=255) aTGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACGCGCTGCGCTGCAGCTGGAGca > 1:235424/1‑149 (MQ=255) | CTGGAGCAGGCCAGCGATGAACAGAAGCAGGCCATCGCCGAACTGATCCAGGCCCGCGAGGAGGCCGAACAGGCCAACCGTGCCAAATCGGATTTCCTGGCGATGATGAGCCATGAGTTGCGCACCCCGATGAATGGCGTGCTGGG‑CATGCTGCAACTGCTGGAAACCACACCGCTGAGCAGTGAACAGGCCGATTACACGGCAGTGGCCAGCGAGTCCACCGGGCATTTGCTCAAGGTCATCAACGACATCCTCGATTTTTCGCGCATCGAACGCGCTGCGCTGCAGCTGGAGCA > NC_002947/4715478‑4715773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |