Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,748,520 | A→T | 6.9% | D75V (GAC→GTC) | PP_4203 → | ubiquinone oxidoreductase electron transfer flavoprotein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,748,520 | 0 | A | T | 6.9% | 167.3 / 2.7 | 58 | D75V (GAC→GTC) | PP_4203 | ubiquinone oxidoreductase electron transfer flavoprotein |
Reads supporting (aligned to +/- strand): ref base A (33/21); new base T (2/2); total (35/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 |
GTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTACATCATCTCGCT > NC_002947/4748374‑4748664 | gTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACt > 3:318740/1‑149 (MQ=255) gccgcctgccgcctGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGa > 1:238497/1‑148 (MQ=255) ctgccgcctgAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCAGACTGGAAAGAGc > 4:46421/1‑149 (MQ=255) ccgcctgAAGCAGACCGCCGCCGCAGCCGGTAGCGAAATCAGCGGCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCg < 4:256322/149‑1 (MQ=255) ccgcctgAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCg < 1:65669/149‑1 (MQ=255) tgAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTCTTTCCAGTCGGGGAACAGCTCgtt < 7:104131/146‑3 (MQ=255) tgAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCACGCGCCCTGAACGAGCTCTTTCCAGTCGGGGAACAGCTCgtt > 8:104131/1‑144 (MQ=255) gAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCAc > 1:331566/1‑149 (MQ=255) gCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCACCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGc > 4:166545/1‑149 (MQ=255) ggCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAaca > 2:314000/1‑149 (MQ=255) gccgccGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGCACGAGCTGTGCCCCGACGGGAAAGAGCTCGGTGCACCGCTGAagac > 4:206175/1‑149 (MQ=255) gccgAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCg > 6:20807/1‑148 (MQ=255) ccgAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCGGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGaa < 6:50632/149‑1 (MQ=255) gTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGTTCGGTGCACCGCTGAACACCGAAGTGAAgcgc < 4:318740/149‑1 (MQ=255) aGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCt < 1:314000/148‑1 (MQ=255) gCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTAc > 7:156293/1‑149 (MQ=255) gCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTAc < 3:206175/149‑1 (MQ=255) ggAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATg > 7:117010/1‑149 (MQ=255) gagaAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATg < 2:238497/148‑1 (MQ=255) gaAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCTCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCg > 8:240256/1‑149 (MQ=255) gaAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCg > 3:16477/1‑149 (MQ=255) gCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAgc < 3:46421/149‑1 (MQ=255) tCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAg > 7:358075/1‑149 (MQ=255) ggCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCg < 7:214439/133‑1 (MQ=255) ggCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCg > 8:214439/1‑133 (MQ=255) ccACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTg > 3:280987/1‑149 (MQ=255) acaTCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGAc > 2:1755/1‑149 (MQ=255) ctctctGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGtt > 5:10015/1‑149 (MQ=255) ctctctGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGt > 8:149403/1‑148 (MQ=255) tctctGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCAGAGTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGCAGCGCGACGACATGTACGTACTCAAGGATGCCGGCAGGGCGCCCAAGCTGCCTGACCTGTTc > 8:190822/1‑149 (MQ=255) tGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGt < 1:1755/147‑1 (MQ=255) gcgcAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTg < 8:117010/146‑1 (MQ=255) gcgcAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGcc > 7:273244/1‑148 (MQ=255) gcgcAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGcc > 7:41371/1‑148 (MQ=255) gcgcAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGcc > 5:170611/1‑148 (MQ=255) aGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGa < 6:170611/149‑1 (MQ=255) ttCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGAc > 4:299998/1‑129 (MQ=255) ttCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGAc < 3:299998/129‑1 (MQ=255) cGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATg < 3:166545/148‑1 (MQ=255) cGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGc > 6:17828/1‑149 (MQ=255) gAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGca > 4:357965/1‑149 (MQ=255) ccGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGccc > 4:298760/1‑97 (MQ=255) cgcgCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCa > 6:221281/1‑149 (MQ=255) gcgcCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCAt < 5:160234/149‑1 (MQ=255) cgcCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATg < 4:16477/149‑1 (MQ=255) ccTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGc > 2:284265/1‑148 (MQ=255) accGAGCTCTTTCCAGTCGGGGAACAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTa > 4:90446/3‑149 (MQ=255) ccGAGCTCTTTCCAGTCGGGGAACAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTAc < 3:90446/148‑1 (MQ=255) cGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTAca < 3:261880/149‑1 (MQ=255) gAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTAcat < 7:149403/149‑1 (MQ=255) gAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAAAACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTAcat < 8:358075/149‑1 (MQ=255) gCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTAcatca > 4:383424/1‑149 (MQ=255) gTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTACATCAtct > 1:3281/1‑149 (MQ=255) cccGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAAc < 6:75950/135‑1 (MQ=255) cccGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAAc > 5:75950/1‑135 (MQ=255) cccGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTACATCATCTCGCt > 6:61845/1‑149 (MQ=255) ccGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAgcgc > 2:321929/1‑82 (MQ=255) ccGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAgcgc < 1:321929/82‑1 (MQ=255) | GTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAAGAGCTCGGTGCACCGCTGAACACCGAAGTGAAGCGCGACGACATCTACGTACTCAAGGATGCCGGCAGCGCGACCAAGGTGCCTGACCTGTTCGTGCCCAAGACCATGCACAACCATGGCAACTACATCATCTCGCT > NC_002947/4748374‑4748664 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |