| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,140,396 | A→C | 6.5% | intergenic (+108/+272) | PP_4524 → / ← PP_4525 | sodium‑solute symporter/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,140,396 | 0 | A | C | 6.5% | 241.8 / 7.2 | 77 | intergenic (+108/+272) | PP_4524/PP_4525 | sodium‑solute symporter/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (37/35); new base C (3/2); total (40/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 | |||||||||||
GTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAGTGGTTTATTCA > NC_002947/5140250‑5140542 | gtgtCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAATTCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAg > 5:282511/1‑149 (MQ=255) tCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCgg > 3:299696/1‑149 (MQ=255) tCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTCCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCg < 7:169294/148‑1 (MQ=255) gcgcAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGaa < 1:72627/143‑1 (MQ=255) gcgcAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGaa > 2:72627/1‑143 (MQ=255) gcgcAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGcc > 4:85711/1‑149 (MQ=255) gcgcAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGc < 2:83236/148‑1 (MQ=255) cAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCttt < 4:159615/149‑1 (MQ=255) aGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGt < 3:325463/149‑1 (MQ=255) tCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCg > 7:120586/1‑149 (MQ=255) cggcggTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCa < 5:28948/149‑1 (MQ=255) gcggTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAgc < 5:392295/149‑1 (MQ=255) ggTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAgcgc > 3:41173/1‑149 (MQ=255) ggTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAgcgc > 6:38180/1‑149 (MQ=255) gTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGcc > 5:286195/1‑149 (MQ=255) ccTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGGCCCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGtt < 1:107692/149‑1 (MQ=255) cTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGa > 1:52092/1‑149 (MQ=255) cTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGa < 2:211492/149‑1 (MQ=255) tGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGAc > 1:103585/1‑149 (MQ=255) tgctgTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGttt > 1:281584/1‑149 (MQ=255) ctgTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGttt < 3:85711/147‑1 (MQ=255) ctgTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGttt < 2:52092/147‑1 (MQ=255) tgTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTgcg < 3:266282/149‑1 (MQ=255) ccGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCgctgc > 6:71181/1‑149 (MQ=255) gCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGctct < 4:299696/149‑1 (MQ=255) cccTTTCGCTTGTAGGAGCGGGC‑TGCCCGCGAATGGGCTGGTACAGGCTATAGAAATCAGCAGTCACAAAAAGG‑CCGCTGCACCCACTCTGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTtc < 8:226047/149‑1 (MQ=255) cTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTtca > 1:171413/1‑149 (MQ=255) ttCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTtcat > 2:227123/1‑148 (MQ=255) ttGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCg > 4:110829/1‑149 (MQ=255) ttGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGCCg > 2:235965/1‑149 (MQ=255) tGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCgg > 1:364927/1‑149 (MQ=255) gTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGt < 8:305377/100‑1 (MQ=255) gTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGt > 7:305377/1‑100 (MQ=255) gTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCCCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCg < 6:94387/147‑1 (MQ=255) gggCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCAc > 5:146430/1‑149 (MQ=255) ggCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCAcc < 2:281584/149‑1 (MQ=255) cTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCgg < 5:71181/149‑1 (MQ=255) ccGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGc > 3:30751/1‑148 (MQ=255) cgcgAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCaa < 4:41173/149‑1 (MQ=255) gcgAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAg > 1:211437/1‑149 (MQ=255) gAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAggg < 7:258095/149‑1 (MQ=255) gAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAggg > 5:120362/1‑149 (MQ=255) aaGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTtc > 6:263727/1‑117 (MQ=255) aaGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTtc < 5:263727/117‑1 (MQ=255) aaGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGggtg > 2:207519/1‑149 (MQ=255) aGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGggtgg > 7:183383/1‑149 (MQ=255) ggCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGgtggtg > 1:57259/1‑149 (MQ=255) gCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCAGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGtggtgg > 6:203892/1‑149 (MQ=255) gTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGAt < 4:30751/148‑1 (MQ=255) cAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGc < 1:227123/149‑1 (MQ=255) ggCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGccc < 2:364927/149‑1 (MQ=255) aaaTCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGACGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTACATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCTAGGCGa > 5:375632/1‑149 (MQ=255) aaTCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGAcg > 3:359668/1‑71 (MQ=255) aaTCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGAcg < 4:359668/71‑1 (MQ=255) aaTCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGAc < 6:177583/149‑1 (MQ=255) agcagACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGc < 7:284986/148‑1 (MQ=255) gACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGt < 8:183383/149‑1 (MQ=255) acaAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCGAAGGCGACAGCCAGGTCAt > 4:12425/1‑149 (MQ=255) caAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATg < 2:57259/149‑1 (MQ=255) aaaaaGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGTTCGGCACCGGCTGCAAGGGTGGTGGGATCCGCCCCAAGGCGACCGCCAGGTCAggg > 8:243303/1‑149 (MQ=255) aaaaaGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATg > 7:317600/1‑148 (MQ=255) caaaGG‑CCGCTTCACCCGAGTGGGTGCAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCCTCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGCTCAGCCCCAAGGCGACAGCCAGGTCATg > 5:158063/2‑147 (MQ=38) caaaGG‑CCGCTTCACCCGAGTGGGTGCAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATg > 3:97773/2‑147 (MQ=39) aaaaGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGa < 1:207519/149‑1 (MQ=255) g‑CCGCTTCACCCGAGTGGGTGCAGCGGCCTTTTCCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAg > 4:307983/1‑149 (MQ=255) g‑CCGCTTCACCCGAGTGGGTGCAGCGGCCTTTTCCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAg < 3:307983/149‑1 (MQ=255) ccGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGt < 6:120362/149‑1 (MQ=255) cGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATAAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGtt > 7:105864/1‑149 (MQ=255) cACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGa < 2:103585/147‑1 (MQ=255) cACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACa < 6:286195/149‑1 (MQ=255) aCCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAg > 1:363118/1‑149 (MQ=255) ccACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAGTg > 2:196517/1‑149 (MQ=255) ccACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAGTg < 5:38180/149‑1 (MQ=255) ccACTCGGGTGAAGCGGCATTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAGTg > 2:34992/1‑149 (MQ=255) cACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAGTgg < 5:203892/149‑1 (MQ=255) gggTGCAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAGTGGTTTa < 4:97773/148‑1 (MQ=255) gggTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAGTGGTTTAt < 2:169723/149‑1 (MQ=255) tGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAGTGGTTTATTCa > 1:155845/1‑149 (MQ=255) gAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAGTGGTTTATTCa > 6:221960/1‑148 (MQ=255) | GTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCGGCCCTTTCGCTTGTAGGAGCGGGCTTGCCCGCGAAAGGGCTGGTACAGGCAATAGAAATCAGCAGACACAAAAAGG‑CCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCCCAAGGCGACAGCCAGGTCATGGAGCCAGTTTGACAGTGGTTTATTCA > NC_002947/5140250‑5140542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |