Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,469,180 | A→T | 8.5% | L273H (CTC→CAC) | mrdB ← | murein transpeptidase factor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,469,180 | 0 | A | T | 8.5% | 168.7 / 5.7 | 59 | L273H (CTC→CAC) | mrdB | murein transpeptidase factor |
Reads supporting (aligned to +/- strand): ref base A (30/24); new base T (2/3); total (32/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.52e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.51e-01 |
TACAAAAAAAGTCATGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGATGATGTTCCAACCGGTGCCCAACGG > NC_002947/5469035‑5469322 | taCAAAAAACGTCATGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCACATGCCTACCAGGCCGAATTCCTCGCCGAGc < 6:272743/148‑1 (MQ=255) aaaaaaaGTCATGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACgg < 3:221883/149‑1 (MQ=255) aaaaaaaGTCATGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACgg < 6:400497/149‑1 (MQ=255) aaaaaaaGTCATGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACgg > 7:343511/1‑149 (MQ=255) aaaaaGTCATGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGc > 4:311048/1‑148 (MQ=255) aaaGTCATGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGTGCTCGGCgag < 2:227588/149‑2 (MQ=255) aGTCATGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCgatga < 5:317576/149‑1 (MQ=255) gTCATGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTTGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGTGCTCGGCgaggaa < 5:88485/149‑2 (MQ=255) aTGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGatgatg > 8:162108/1‑147 (MQ=255) ggTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCCTGCCGAATTCCTCGCCGAGCACGGCGATGAGGCAGt > 7:242363/1‑149 (MQ=255) tCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCg < 3:361436/149‑1 (MQ=255) tCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCg < 7:162108/149‑1 (MQ=255) aGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGgt < 3:311048/149‑1 (MQ=255) gCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGgtgt < 7:121040/149‑1 (MQ=255) tGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGAGAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGTGCTCGGCgag > 1:63526/1‑132 (MQ=255) tGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGAGAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGTGCTCGGCgag < 2:63526/133‑2 (MQ=255) cGCAATCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACGAGGCCACGGCCGATCAGCTGCTGGTAGACAATCAGCAGCAGGCAGTTGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCttt < 5:284766/149‑1 (MQ=255) agcagcTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCgg < 3:271984/149‑1 (MQ=255) cTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCAGGCaaa > 1:147457/1‑148 (MQ=255) cGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTc > 2:243607/1‑148 (MQ=255) cGAACAGGGTCTGCGACTGGGCGGTGATCACCAGGCCACGGCAGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTcc < 1:294938/149‑1 (MQ=255) aaCAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAg > 4:348219/1‑149 (MQ=255) gTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGC‑‑‑GATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTg > 1:187733/1‑149 (MQ=255) gcCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGt > 8:202191/1‑149 (MQ=255) cTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGc > 3:72468/1‑149 (MQ=255) gCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAag > 5:235534/1‑149 (MQ=255) tGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAagcagc > 6:69904/1‑149 (MQ=255) aCCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCagccagcc > 7:237486/1‑149 (MQ=255) cAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCtt > 7:210571/1‑149 (MQ=255) ccACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGcc < 8:343511/149‑1 (MQ=255) agcagGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACcccgccc > 8:113307/1‑147 (MQ=255) gTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTgg > 4:284885/1‑76 (MQ=255) aGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATc > 8:188591/1‑149 (MQ=255) gACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATc < 6:235534/148‑1 (MQ=255) gACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGC‑‑‑GATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATcgcc < 2:187733/148‑1 (MQ=255) cAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTg > 1:364878/1‑122 (MQ=255) cAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTg < 2:364878/122‑1 (MQ=255) cAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAaca < 1:72102/129‑1 (MQ=255) cAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAaca > 2:72102/1‑129 (MQ=255) tCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCgccgcc > 1:258097/1‑149 (MQ=255) cagcagcagGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCt > 2:97974/1‑149 (MQ=255) agcagcagGCAGATGCCTACCAGGCCGAATTCCTCGCCTAGCACGGCGATGATGAATTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGAAGCCAGCCTTTGCCAAACACCCCGACCGAGCCGATCgcagcc > 4:131484/1‑147 (MQ=255) agcagcagGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCtt < 5:69904/149‑1 (MQ=255) caggcagATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACt < 7:188591/149‑1 (MQ=255) gcagATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGga < 1:243607/149‑1 (MQ=255) gcagATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGga > 8:322175/1‑149 (MQ=255) agATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGgat > 8:134881/1‑148 (MQ=255) gATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTg > 1:181605/1‑144 (MQ=255) gATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTg < 2:181605/144‑1 (MQ=255) tGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGatgatg < 7:202191/149‑1 (MQ=255) ccTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGATGATGtt < 3:131484/149‑1 (MQ=255) cTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGATGATGTTc > 2:308810/1‑149 (MQ=255) tACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGATGATGTTc > 1:18926/1‑148 (MQ=255) ccAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGATGATGTTcc < 3:348219/147‑1 (MQ=255) aaTTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGATGATGTTCCAACCGGTg > 7:4304/1‑147 (MQ=255) aaTTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGATGATGTTCCAACCGGTg < 8:4304/147‑1 (MQ=255) ccTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCCATCGCCGCCTTGGACTGGATGATGTTCCAACCGGTGACCa > 3:213843/1‑147 (MQ=255) tCGCCGTGCTCGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGATGATGTTCCAACCGGTGCCCAACgg > 3:177686/1‑149 (MQ=255) tCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGATGATGTTCCAACCGGTGCCCAACgg > 3:50279/1‑149 (MQ=255) | TACAAAAAAAGTCATGGTCAGGCTGCCCGCAAGCAGCTTGCCGAACAGGGTCTGCGCCTGGGCGGTGATCACCAGGCCACGGCCGATCAGCAGCAGGTAGACAATCAGCAGCAGGCAGATGCCTACCAGGCCGAATTCCTCGCCGAGCACGGCGATGATGAAGTCGGTGTGGCTTTCCGGCAAAAAGTCCAGGTGCGACTGCGTGCCAAGCAGCCAGCCTTTGCCAAACACCCCGCCCGAGCCGATCGCCGCCTTGGACTGGATGATGTTCCAACCGGTGCCCAACGG > NC_002947/5469035‑5469322 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |