| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,525,770 | C→A | 9.6% | intergenic (+60/‑63) | PP_4858 → / → PP_4859 | hypothetical protein/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,525,770 | 0 | C | A | 9.6% | 254.0 / 12.1 | 88 | intergenic (+60/‑63) | PP_4858/PP_4859 | hypothetical protein/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (42/37); new base A (5/4); total (47/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCGGCTCCGATCGTCTGATCGAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGGAGAGTGGCCGTG > NC_002947/5525624‑5525914 | ggcggcTGCGATCTTCTGATCGAACCAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCa < 1:338594/148‑1 (MQ=255) gcggcTCCGATCGTCTGATCGAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCAtt < 6:222118/149‑1 (MQ=255) gcTCCGATCGTCTGATCGAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGAc < 1:156258/149‑1 (MQ=255) tCCGATCGTCTGATCGAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCg > 2:19558/1‑149 (MQ=255) ccGATCGTCTGATCGAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCgg > 7:231586/1‑149 (MQ=255) aTCGTCTGATCGAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAACGAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCAATGGACCGGGc < 1:304886/149‑1 (MQ=255) gTCTGATCGAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTg < 3:264536/149‑1 (MQ=255) tCTGATCGAACAAGCTGGCCGTGTCGCAGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCAATGGACCGGGcctgga < 1:181858/149‑6 (MQ=255) aTCGAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGttttt < 7:220305/149‑1 (MQ=255) gAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGttttttt < 1:362299/148‑1 (MQ=255) gAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCAATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCAGGTCCATTGAAAGGGCTTTGtttattta > 5:310886/1‑149 (MQ=255) aaCCAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTAt < 3:356939/149‑1 (MQ=255) gCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTaga < 6:203126/149‑1 (MQ=255) gCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTaga < 5:213089/149‑1 (MQ=255) gtgtCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGcc > 6:255258/1‑147 (MQ=255) tCGCTGAATGTGGATCGGATCGCCTGGTTGAACTGAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGcc < 6:310886/149‑1 (MQ=255) tCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGGGAGCGGATCGCCAGGGCCGAAAA‑GCACAACTTCTGTCCCAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCGTTGTTTTGTTAGCTAGAGTGCCCTGcc > 6:112152/1‑149 (MQ=255) gCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTg > 3:334869/1‑140 (MQ=255) gCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTg < 4:334869/140‑1 (MQ=255) cTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGa > 8:199411/1‑149 (MQ=255) cTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGa < 7:68065/149‑1 (MQ=255) tGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGAc > 4:355795/1‑149 (MQ=255) tGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCAAGCCTGAc > 5:356450/1‑149 (MQ=255) ggTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCTCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGtt < 3:347825/149‑1 (MQ=255) tGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTa < 7:231702/148‑1 (MQ=255) tGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTa > 7:191270/1‑148 (MQ=255) gCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTa > 3:196938/1‑146 (MQ=255) gCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTa > 2:205554/1‑146 (MQ=255) gCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACa < 1:19558/148‑1 (MQ=255) gCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAg < 2:15176/149‑1 (MQ=255) gCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGGAAAAACGCTTGCTCCCCTCCAGGCCCCGTCCATTTTCCGGGCGTTGTTTTTTTATCTAGAGTGCCCCGCCAGACCggtt > 1:319103/1‑143 (MQ=255) tCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATTGCCGAAAA‑GAACAAATTCTGTCACAACGATTGGTCACCTCAAGTCCCGGTCAATTTAAAGGGATTTGTTTTTTTATGTAGAGTTACCATACTGACAGTTTCAGaa > 5:225573/1‑149 (MQ=255) ggATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAC‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGaa < 8:159577/147‑1 (MQ=255) ggATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGaa < 3:355795/147‑1 (MQ=255) ggATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGc > 4:323378/1‑149 (MQ=255) ggATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGGCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGc > 4:328930/1‑149 (MQ=255) aTCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGccc < 5:255258/149‑1 (MQ=255) tgCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGc < 3:340149/148‑1 (MQ=255) ccTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGc > 4:340149/1‑147 (MQ=255) cTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTGTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGcatc < 6:391670/149‑1 (MQ=255) tGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGcatca > 4:162581/1‑149 (MQ=255) gTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCAtg > 3:179261/1‑149 (MQ=255) ttGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCAtgc > 7:166031/1‑149 (MQ=255) aGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCcgcgc > 1:20902/1‑149 (MQ=255) aGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCcgcgc < 1:205554/149‑1 (MQ=255) tgAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTGTGTTTTTTTATCTAGAGTGCCCAGCGTGCCCGTTACAGAAGCCCGCATCAAGCTGCCGCGCGCCGac > 8:352974/1‑147 (MQ=255) gAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTaga < 5:323996/96‑1 (MQ=255) gAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTaga > 6:323996/1‑96 (MQ=255) aGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTATCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGaa > 2:365851/1‑146 (MQ=255) aTCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAg < 7:199411/147‑1 (MQ=255) aTCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGc < 2:307141/148‑1 (MQ=255) aTCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGc < 3:162581/148‑1 (MQ=255) gCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACa < 6:255270/149‑1 (MQ=255) aaaa‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAg < 8:166031/149‑1 (MQ=255) aacaacTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGcc < 2:268785/82‑1 (MQ=255) aacaacTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGcc > 1:268785/1‑82 (MQ=255) aacaacTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACAGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCt > 8:369907/1‑149 (MQ=255) tGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAACCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATgc > 7:261795/1‑149 (MQ=255) cacaACGCTTGCTCCCCTCCAGGCCCGGTCCATTGAACGGGCATAGTTTTTTTATCTAGAGTGCCAAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATgcccc > 7:160410/1‑147 (MQ=255) acaACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATgccgcc > 3:344037/1‑149 (MQ=255) acaACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATgccgc < 8:231586/148‑1 (MQ=255) caACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCgcct > 1:334855/1‑149 (MQ=255) caACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCgcct > 6:36829/1‑149 (MQ=255) gCTTGCTCCCCTCCAGGCCCTGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGGCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCgcctgcct < 8:160410/149‑1 (MQ=255) cTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCa > 6:21236/1‑149 (MQ=255) cTCCCATCCAGGACCGGTAAATTGACCGGGCATTGTTTTTTTATATAGAGTGCCCAGCCTGACCGTTACAGCAGCCCGCATCATGATGCAGCGCGCCGAAAAGAACCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCAGCATGATc > 4:117671/1‑148 (MQ=255) tCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCAt > 7:229281/1‑149 (MQ=255) cccTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATg > 5:380556/1‑148 (MQ=255) cccTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATg > 1:325938/1‑148 (MQ=255) cccTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGACACGCCCTGCTCGATGCAGCCTGCCTGCTCATg > 4:252289/1‑148 (MQ=255) cTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATg > 4:49988/1‑146 (MQ=255) tCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCGGCCTGCTCATGga > 3:227245/1‑147 (MQ=255) agcAGGCCCGGGCCATTGCCCGGGCTTTGTTTTTTTCTCTACCGTGCCCAGCCTGACCGTTACAGAAGCCCCCATCATGCTGCCGCGCGCCGAACAGCCGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGga < 4:227245/145‑1 (MQ=255) ccAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGGagag > 6:304978/1‑149 (MQ=255) cAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGgaga < 2:20902/147‑1 (MQ=255) cAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGGAGAGt < 3:252289/149‑1 (MQ=255) cAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGGAGAGt > 3:252023/1‑149 (MQ=255) cAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGGAGAGt > 3:105816/1‑149 (MQ=255) ggCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGGCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGGAGAGTgg < 3:304394/149‑1 (MQ=255) agCCCGGTCAATGGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGAt > 6:361987/2‑123 (MQ=255) agCCCGGTCAATGGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGAt < 5:361987/122‑1 (MQ=255) gCCCGGTCAATGGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGACCTGCTCGATGCCGCCTGCCTGCTCATGGAGCGTGGc > 8:261216/1‑149 (MQ=255) cccGGTCAATGGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGccc > 4:72908/1‑113 (MQ=255) cccGGTCAATGGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGccc < 3:72908/113‑1 (MQ=255) cctgTCCATTGACCGGGCTTTGTTTTTTTATCTAGTGTGCCCAGCCTGAGCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGAGCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGGTCATGGAGAGTGGCCg < 8:229281/146‑1 (MQ=255) ccGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGgaga < 2:286015/142‑1 (MQ=255) ccGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGgaga > 1:286015/1‑142 (MQ=255) ggTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGGAGAGTGGCCGTg > 1:120459/1‑149 (MQ=255) | GGCGGCTCCGATCGTCTGATCGAACAAGCTGGCCGTGTCGCTGAAGGTGGCTCGGATCGCCTGGTTGAACTCAGCCGTGTGAGCTGATCGCCATGGCCGAAAA‑GAACAACTTCTGTCACAACGCTTGCTCCCCTCCAGGCCCGGTCCATTGACCGGGCTTTGTTTTTTTATCTAGAGTGCCCAGCCTGACCGTTACAGAAGCCCGCATCATGCTGCCGCGCGCCGAACAGAAGCTACAGACCCGCCAGGCCCTGCTCGATGCCGCCTGCCTGCTCATGGAGAGTGGCCGTG > NC_002947/5525624‑5525914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |