Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,537,069 C→T 10.0% intergenic (+46/+57) nadE → / ← PP_4870 NH(3)‑dependent NAD(+) synthetase/azurin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,537,0690CT10.0% 137.5 / 4.6 50intergenic (+46/+57)nadE/PP_4870NH(3)‑dependent NAD(+) synthetase/azurin
Reads supporting (aligned to +/- strand):  ref base C (23/22);  new base T (2/3);  total (25/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.04e-01

TGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAA  >  NC_002947/5536921‑5537216
                                                                                                                                                     |                                                                                                                                                   
tGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAAc                                                                                                                                                     <  4:27864/149‑1 (MQ=255)
  ccTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGTGGGTTCACCCTCGTATTCGCGGGTGAAcc                                                                                                                                                    <  8:127772/148‑1 (MQ=255)
  ccTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCTCGTATTCGCGGGTGAAcc                                                                                                                                                    <  3:78105/148‑1 (MQ=255)
   cTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGAGGGTTCACCCGGGGATAAGAGGGTGAACCCa                                                                                                                                                  >  6:390270/1‑149 (MQ=255)
    ttCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCAc                                                                                                                                                 >  1:313188/1‑149 (MQ=255)
    ttCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCAc                                                                                                                                                 >  3:18873/1‑149 (MQ=255)
      ccTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCAcc                                                                                                                                                <  2:280229/148‑1 (MQ=255)
             gggCAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCCGGAATACGCGGGGGCACCCACCGACGCCtt                                                                                                                                        >  8:252032/1‑149 (MQ=255)
                cAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGACGGTGAACCCACCGACGCATTcg                                                                                                                                      >  1:257753/1‑149 (MQ=255)
                cAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgc                                                                                                                                     <  5:153625/149‑1 (MQ=255)
                cAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgc                                                                                                                                     <  2:313188/149‑1 (MQ=255)
                cAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgc                                                                                                                                     <  4:18873/149‑1 (MQ=255)
                  gCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                   <  3:9038/149‑1 (MQ=25)
                  gCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                   <  5:211390/149‑1 (MQ=25)
                   ccGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCggg                                                                                                                                  <  8:84124/149‑1 (MQ=255)
                    cGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAACCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGt                                                                                                                                 <  6:37553/149‑1 (MQ=255)
                      gTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTAAACCGCGCATACGAGGGTTAACCCACCCACCCATTAGCGGGTg                                                                                                                                >  3:337611/1‑148 (MQ=255)
                         gACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGAAc                                                                                                                             <  5:156190/148‑1 (MQ=21)
                            cAGGCAGTGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGc                                                                                                                         <  2:7000/149‑1 (MQ=255)
                                              atcG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCt                                                                                                                     <  3:24169/135‑1 (MQ=255)
                                                   tcgCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGCATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCGGGGTTCGCCGTCAGc                                                                                                   >  5:347581/1‑149 (MQ=255)
                                                       cACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTAACCCGCGAATATGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTGCGGGCGGGTTCGGCGTCAGCCgtt                                                                                               >  6:83460/1‑149 (MQ=37)
                                                               gCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCCCGAATAAGAGGGTGAACCCCCCGAACCAATACCCGGTGAACCCCCGCCAGCCCGGTTCGCCGGGTGCCGTTGATTaaat                                                                                       >  8:187790/1‑146 (MQ=255)
                                                                 acgccccACCCCAAGCGCCACCTCCCGTTCGCTCCTTTATAAGTGCCCTGCTGGAGCGGGTTCACCCGCTAATACGAGGGTCAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGa                                                                                     <  3:237711/145‑1 (MQ=25)
                                                                 aaGCCCCAGCCCAAGCGCGAACTGCCGTTCGCTCCTTGATAAGGGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGa                                                                                     <  7:252032/149‑1 (MQ=255)
                                                                 aaGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTAACCCGCGATTACGAGGGTGAACCCACCGACGCATTCCCGGGTGCTCCCGCTCCTGCACGGTTCGCCGGCAGCCATTGATTACTTGa                                                                                     >  7:258953/1‑149 (MQ=255)
                                                                     cccAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGCATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCGCCAGCAGGGTTCGCCGTCAGCCTTTGATTACATGACGAt                                                                                 >  6:397433/1‑149 (MQ=255)
                                                                      ccaccaCACGCGCCAACTGCCGTACGCTCATTGATATGGGGCCTCCAGGTGCGGGTACACCCGCTAATACTAGGGTTAACCCACCGACGCATGCGGGGGTTAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATg                                                                                <  7:148356/149‑1 (MQ=255)
                                                                           acacGCGCGAACTGCCGTTCGCTCCTTGATAAGTGCCGTGCAGCAGCGGGTTCACCCGCGTATACGAGGGGTAACCCACCGACGCATTGGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCtt                                                                           <  5:390270/149‑1 (MQ=255)
                                                                             aaGCGCGAACTGCCGTTCGCTCCTTGATAAGGGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGc                                                                         <  5:397433/149‑1 (MQ=255)
                                                                              aGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCTGCCTTTGATTACTTGACGATGACCTTGcc                                                                        <  7:187790/149‑1 (MQ=255)
                                                                                        gcggtgcGCTCCTTTATACGGGGCCGCCCGCCGCGGGTCCCCCCGCTAATACGCGGGCCACCCCACCCACGCATTCGCGGGTCACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCatcatc                                                              <  2:206459/143‑1 (MQ=255)
                                                                                         ccGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCTAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCatcatc                                                              <  1:131243/148‑1 (MQ=255)
                                                                                          cGTGCGCTCCTTGATAAGGGGCCTGCCGGAGCGGGTTCCCCCGCTAATACGCGGGTGAACCCACCGACGCATGCGCGGGTGAACCCGCTCCTGCGGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCga                                                            <  6:347581/149‑1 (MQ=255)
                                                                                                                            gTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAg                          >  8:229950/1‑149 (MQ=255)
                                                                                                                                aCCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcac                      >  8:355349/1‑149 (MQ=25)
                                                                                                                                 cccGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcac                      >  6:39464/1‑148 (MQ=25)
                                                                                                                                 cccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacc                     >  1:269272/1‑149 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGACCCCACCGACGCCTTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGCGAAGGTGCAGAAGAAGATGTAGTcacca                    >  5:112244/1‑149 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGAtgt                                                       <  6:134124/114‑1 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGAtgt                                                       >  5:134124/1‑114 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacca                    >  7:317449/1‑149 (MQ=255)
                                                                                                                                  ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacca                    >  2:151459/1‑149 (MQ=255)
                                                                                                                                    gcgAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTa                           <  2:189692/140‑1 (MQ=255)
                                                                                                                                    gcgAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTa                           >  1:189692/1‑140 (MQ=255)
                                                                                                                                    gcgAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCaccacc                  >  5:120084/1‑149 (MQ=255)
                                                                                                                                       aaTACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGc               <  8:197497/149‑1 (MQ=255)
                                                                                                                                              gggTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGc        >  6:168440/1‑149 (MQ=255)
                                                                                                                                               ggTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCt       >  6:166212/1‑149 (MQ=255)
                                                                                                                                                gTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCtt      >  8:177024/1‑149 (MQ=255)
                                                                                                                                                    aCCCACCGCCGGATTCGCGGGGGAACCCGCTCCTGCTGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGaa  <  8:258953/149‑1 (MQ=255)
                                                                                                                                                    aCCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGaagaag                                <  4:59798/119‑1 (MQ=255)
                                                                                                                                                    aCCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGaagaag                                >  3:59798/1‑119 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
TGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCG‑TCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAA  >  NC_002947/5536921‑5537216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑