| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,586,030 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,586,030 | 0 | C | T | 100.0% | 76.8 / NA | 24 | intergenic (+113/+102) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (9/15); total (9/15) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| * | NC_002947 | 4,586,031 | 0 | T | C | 100.0% | 73.9 / NA | 24 | intergenic (+114/+101) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (9/15); total (9/15) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTCTGC‑GGTA‑AACCCGCTCCTACCAGGGA‑CGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCG > NC_002947/4585899‑4586106 || gCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTc < 4:88082/149‑1 (MQ=255) aCCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTa > 1:244683/1‑149 (MQ=255) aCCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTa < 3:44516/149‑1 (MQ=255) ccGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTAc < 5:198308/149‑1 (MQ=255) ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGGAGCTGCATTGAAAGGTTGAGGATCAACCGGTGCTTGGCAAGGTGAAGATCTTGAATTGATCGGGCGGGCC‑TCTTCGCGGGTA‑AACCCGCTGCTACAAGGGA‑ccgtg > 8:300665/1‑145 (MQ=255) ggTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGc > 2:310077/1‑149 (MQ=39) ggTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGc > 7:291195/1‑149 (MQ=39) gACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTTCCAGGGACCGTGCCGGCCtt < 7:300665/148‑1 (MQ=39) gACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTg < 3:317330/149‑1 (MQ=39) cACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCATCTTCGCGGGTA‑AACCCGCTCCTACCAgg < 1:30339/131‑1 (MQ=39) cACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAgg > 2:30339/1‑130 (MQ=255) cGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATgc < 2:244683/149‑1 (MQ=39) ccGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTAGGCAACGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCCTGCCCGCCATGAAAgcggac > 5:120921/1‑146 (MQ=37) cGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCt > 1:196784/1‑149 (MQ=39) aCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTgg < 5:282440/149‑1 (MQ=39) tGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg < 4:145704/147‑1 (MQ=39) tGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg > 3:145704/1‑147 (MQ=39) aTCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATgcg < 4:4379/129‑1 (MQ=38) aTCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATgcg > 3:4379/1‑129 (MQ=38) cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTACTACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCggg < 1:310077/148‑1 (MQ=255) cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg < 2:196784/146‑1 (MQ=38) ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTAcc < 8:291195/148‑1 (MQ=38) ctCCAGTGAAAGGTTGAGGATGAGCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTAc < 4:78934/147‑1 (MQ=37) ctttGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGGATTGATCGGGCCGGCC‑TCTTCGCGGGTA‑AACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGTGCTGCCCCTGGTAGGAGCGGGTTTACCcg < 6:120921/145‑1 (MQ=37) || GCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCC‑TCTCTGC‑GGTA‑AACCCGCTCCTACCAGGGA‑CGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCG > NC_002947/4585899‑4586106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |