New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 199462 = | 45 (1.260) | 5 (0.150) | 5/278 | 3.9 | 11.1% | coding (4968/26049 nt) | PP_0168 | putative surface adhesion protein |
? | NC_002947 | 202730 = | 37 (1.080) | coding (8236/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTT > NC_002947/202583‑202875 | gTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGAccc < 7:31885/148‑1 (MQ=255) tGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAg > 1:59646/1‑147 (MQ=255) cGAGCCAGGCACTCCAGGCAACGAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGcaa < 1:88309/147‑1 (MQ=255) tCCAGGCAACGAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTc > 3:43784/1‑148 (MQ=255) cAGGCAACGAAGGCGATATCGTCAAAGTCACTATTAGTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACG‑CCAGCTCAcc > 5:183597/1‑148 (MQ=255) aGGCAACGAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCAcc < 1:57603/148‑1 (MQ=255) ggCAACGAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCa < 1:140012/148‑1 (MQ=255) gAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAAACGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGACCAGGTCACCATCAAgg > 8:16620/1‑148 (MQ=255) aatgCGATTTCGTAAAATTCACTATTAATTCTGACCAGACCTCGGTGGCCGATAAAGTCAAACCGACCTTAAACGTACATATCAACACCGGCTTTGGCCAAGTCCTTGTCGTTAACCTTAGCAAAAACGCCCATGTCACCATCAAGGc < 6:13265/145‑1 (MQ=16) aaGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGc > 4:142846/1‑148 (MQ=255) aaGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGc > 1:140764/1‑148 (MQ=255) aaaGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAgcg > 2:18682/1‑148 (MQ=255) tCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGcc < 6:46585/148‑1 (MQ=255) tCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGcc < 4:79759/148‑1 (MQ=255) tcttACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTac < 1:111944/146‑1 (MQ=255) ttACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTacac > 5:149502/1‑148 (MQ=255) tACTGCTGACCAGACGTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACATCGCCCAGTTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTaca < 7:16620/146‑1 (MQ=255) ctgctgACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCa > 7:57990/1‑148 (MQ=255) tgctgACCAGACCTCGGTGGCCGAGAACGTCAAACCTACCTTCACCGTACATATCAACACCGCCTTGGCACACGACCTGGTCGTGACCCTTATCAACAACTCCCCGGTCACCATCAAGGCCGGCGAAACAAGCGCGCCGTACACCCAc > 4:152267/1‑148 (MQ=17) aCCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAgg > 2:50095/1‑148 (MQ=255) gaACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTAc < 7:30107/148‑1 (MQ=255) aCGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACaa < 6:149502/148‑1 (MQ=255) cAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAacgac < 3:186655/148‑1 (MQ=255) ccGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTg < 3:142846/148‑1 (MQ=255) ccTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTgg > 6:179441/1‑145 (MQ=255) aCCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATc < 3:71846/147‑1 (MQ=255) atatCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGcc > 6:86023/1‑144 (MQ=255) atatCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTgg < 1:18682/147‑1 (MQ=255) tatCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCt < 5:86023/144‑1 (MQ=255) tatCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGc < 1:204337/148‑1 (MQ=255) tatCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGc < 7:87185/148‑1 (MQ=255) aaCACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCa > 4:191299/1‑148 (MQ=40) acacCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCt > 1:88489/1‑139 (MQ=40) cacCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTg < 2:88489/139‑1 (MQ=39) cACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACg > 1:39715/1‑148 (MQ=32) ccTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCAACt > 5:94262/1‑148 (MQ=17) tCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGt < 1:190006/146‑1 (MQ=32) tGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAAc > 6:6152/1‑148 (MQ=34) ccTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCtt > 1:117252/1‑147 (MQ=34) | GTCACTGACGAGCCAGGCACTCCAGGCAACGAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTT > NC_002947/202583‑202875 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |