| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,681,415 | +CGGG | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5681415 | 2 (0.060) | 20 (0.580) +CGGG |
18/282 | 1.1 | 91.1% | intergenic (‑133/+71) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| ? | NC_002947 | 5681416 = | 2 (0.060) | intergenic (‑134/+70) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein | |||||
TAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCG‑C‑‑‑‑G‑‑‑CTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGC > NC_002947/5681275‑5681555 | gtaatacatgcaaacacagacctcctgaggtgggctgggttcctgttgtgatgctgatggcttcgttctttgtgggagcggccttgtgtcgcgaaaggggcgcgaagcggccccaggctttcattgccactgcatgaaccgccgggg‑‑‑c < 2:87296‑M2/2‑1 (MQ=255) acatgcaaacacagacctcctgagctgggctgggttcctgttgtgatgctgatggcttcgttctttgtcggagcggccttgtgtcccgaaaggggcccgaagccgccccaggctttcatttccactgcatgaaccgccgcgg‑‑‑cggctt > 7:57162‑M2/142‑147 (MQ=255) gcaaacacagacctcctgaggtgggctgggttcctgttgtgatgctgatggcttcgttctttgtgggagcggccttgtgtcgcgaaaggggcgcgaagcggccccaggctttgatttgcccagcatgaaccgccgggg‑‑‑cggcggcggc > 3:33506‑M2/138‑146 (MQ=255) gcaaacacagacctcctgaggtgggctgggttcctgttgtgatgctgatggcttcgttctttgtgggagcggccttgtgtcgcgaaaggggcgcgaagcggccccaggctttcattgccactgcatgaaccgccgggG‑‑‑CTGCTGCGCa < 4:44302‑M2/11‑1 (MQ=255) acagacctcctgaggtggtctgggttcctgttgtgatgctgatgggttcgttctttgtgggagcggccttgtttcgcgaaaggggcgcgaagaggccccaggctttcattgccactgcatgaaccgccgggG‑‑‑CTGCTGCGCAGCCCTa < 2:21348‑M2/17‑1 (MQ=255) agctgctgtggtgggctgggttcctgttgtgatgctgatggcttcgttctttgtgggagcggccttgtgtggcgaaaggggcgcgaagcggccccaggctttcattgccactgcatgaaccgccgggG‑‑‑CTGCTGCGCAGCCCTATcgc < 6:16144‑M2/21‑1 (MQ=255) acctcctgaggtgggctgggttcctgttgtgatgctgatggcttcgttctttgtgggagcggccttgtgtcgcgaaaggggcgcgaagcggccccacgctttcattgccactgcatgaaccgccgggG‑‑‑CTGCTGCGCAGCCCAATagc > 6:83273‑M2/128‑148 (MQ=255) tgggctgggttcctgttgtgatgctgatggcttcgttctttgtgggagcggccttgtgtcgcgaaaggggcgcgaagcggccccaggctttcattgccactgcatgaaccgccgggG‑‑‑CTGCTGCGCAGCCCTATCGCGACACAAGGc < 8:89448‑M2/31‑1 (MQ=255) tgggctgggttcctgttgtgatgctgatggcttcgttctttgtgggagcggccttgtgtcgcgaaaggggcgcgaagcggccccaggctttcattgccactgcatgaaccgccgggG‑‑‑CTGCTGCGCAGCCCTATCGCGACACAAGGc < 8:37515‑M2/31‑1 (MQ=255) tgtggtgCGGCATTGGTTCGTGAATGGTGCGAGAAGCGGCCCCTGTCTTTCATTGCCACTGCATGAACCGAC‑‑‑‑GGTTCTGCTTCCCAGCCCTATCTCGAAACAAGGCCGCTCCCACTCCAGACCACCATGCCCTGCGCCTCACATc < 4:128975/139‑1 (MQ=255) gtcgcgaaaggggcgcgacgcggcccctggctttctttgccagtgattgaaccgccgggG‑‑‑CTGCGGGGCCGCCCTATCGCGAAACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGc < 6:74715‑M2/89‑1 (MQ=255) tcgcgaaaggggcgcgaagcggccccaggctttcattgccactgcatgaaccgccgggG‑‑‑CTGCTGCGCAGCCCTATAGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAACGTCAGGtt > 8:7031‑M2/59‑145 (MQ=255) gcgaaaggggcgcgaagcggccccaggctttcattgccactgcatgaaccgccgggG‑‑‑CTGCTGCGCAGCCCTATCGCGCCACAAGGCCGCTCCCACTCCAGACCACCCCGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGa > 7:134364‑M2/57‑148 (MQ=255) aaaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCG‑CCGCGG‑‑‑CAGCTGCGCACCCCTATACCCAAACAAGGCCCCTCCCCCTCCAAAACACCACCCCCTGAGCCTCAAAAACAAACCAAGGTCATATTGCacaaca > 2:141667/1‑143 (MQ=255) ggggcccctggctttaatgcccactgcatcaaccgcggggG‑‑‑CGGCGGCGCAGCCATAGCGCCACAAATGCCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCa < 5:83273‑M2/108‑1 (MQ=255) ggccccaggatttcattgccactgaatgaaccgccgggG‑‑‑CGGCTGCGCACCCCTAGCGCGACACATGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGc < 8:186690‑M2/110‑1 (MQ=255) cccaggctttcattgccactgcatgaaccgccgggG‑‑‑CTGCTGCGCAGCCCGATCGCGCCACAAGGCCGCGCCCACTCCCGCCCACCAGGCCCGGCGCCTCACATCCTAACCAAGGTCACGTTGCCGCTCCGCGGCACGCCCCCGCCtt > 5:147062‑M2/36‑148 (MQ=255) actgcatgaaccgccgggG‑‑‑CTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGCCCACCAGGCCCTGCGCCGCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCCCGCCCCAGCCGTTCCAATGCGCCCAGGTc > 3:76789‑M2/19‑148 (MQ=255) actgcatgaaccgccgggG‑‑‑CTGCTGCGCAGCCCTATAGCGACACAAGGCCGCTCCCACTACAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTc > 8:45778‑M2/19‑148 (MQ=255) atgaaccgccgggG‑‑‑CTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 8:106723‑M2/14‑127 (MQ=255) tgaaccgccgggG‑‑‑CTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTc < 7:106723‑M2/115‑1 (MQ=255) ccgggG‑‑‑CTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCcg > 6:110846‑M2/6‑144 (MQ=255) cgggG‑‑‑CTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCcgc < 5:110846‑M2/140‑1 (MQ=255) | TAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCG‑C‑‑‑‑G‑‑‑CTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGC > NC_002947/5681275‑5681555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |