New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6000932	27 (0.760)	4 (0.140)	4/230	3.6	15.0%	intergenic (+39/+70)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	= 6000966	24 (0.850)					intergenic (+73/+36)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATC  >  NC_002947/6000821‑6001113                                                                                                                                                   |                                                                                                                                                     ccGGGAGGCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCGCTTCGCGGGTAAACCCGCTCCTACAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTg                                                                                                                                                    <  4:143911/148‑1 (MQ=255)   gggAGTCGTTGTTGTGGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGGTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTa                                                                                                                                                  <  7:42864/148‑1 (MQ=255)           ttgttgttgCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑gg                                                                                                                                          <  6:22176/147‑1 (MQ=255)           ttgttgttgCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑gg                                                                                                                                          <  6:118572/147‑1 (MQ=255)             gttgttgCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTTAAACCCCGCCGTCAA‑GTAGTGGCCCCCCGGAGAGGGGGGGGGTGGACCCGGAGGCGC‑cgggt                                                                                                                                       >  1:149153/1‑146 (MQ=255)                                   atcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCGACAA‑GTAGTGCCCCGCCTGAGCGGGCTGGGGGGCACCTGTAGGCGC‑GGGTTTACCCGCGAAGAGGCCAGTAc                                                                                                                  >  7:135534/1‑147 (MQ=38)                                      aagaagGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAAACCCCTCCGACAA‑GTTGTGCACCGCCGGAGAGGGGGGTGGGGGACCGGGTGGAGC‑GGGGTTTACCGCGCAGAGGGCAGTAcatt                                                                                                               >  4:89897/1‑144 (MQ=255)                                           gggTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCACCGACAA‑GTAGTGCACCCCCGGAGAGGGCGGTGGTGAACCTGTAGGAGCGGGGTTTACCC‑CGCAGAGGCCACTACTTacaacc                                                                                                          >  3:94987/1‑146 (MQ=255)                                                                gCACAAGTGAGCCTGTGCCGGCCTCTTAGCGGGTAAAACCGCGGCGACAA‑ATAGTGGCCCCCCGGATAGGGCAGTGGGGGACCTGTAGGGGC‑GGGGTTTACCGCGAAGAGGCCAAGACGTAAAACACAAACCCCAGGCACGAcccccc                                                                                    >  6:59280/1‑146 (MQ=255)                                                                   caAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAA‑GTAGTGCACGGCCTGAGAGGGCGGTGGTGAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTg                                                                                 <  2:143747/148‑1 (MQ=255)                                                                       tGAGCCGGTGCGGGCCGCTCCGCGGGCAAACCCTCTCC‑ACAACGCTGTCCCCCGCCGGCGCGGGCTGTGGTCAACCGGTCGGTGC‑GGTTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTTGTAc                                                                             <  8:78829/148‑1 (MQ=255)                                                                                        ctTCGCGGGTAAACCCGCTCCTACAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTc                                                            >  7:127369/1‑148 (MQ=255)                                                                                            gcgGGTAACCCCGCTCCTACAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATa                                                         <  3:13901/147‑1 (MQ=255)                                                                                            gcgGGTAACCCCGCTCCTACAA‑GTAGGGCCCCGCCTGCGCGGGGGGGGGTGACCCTGTCGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCAt                                                          <  2:60114/146‑1 (MQ=255)                                                                                                 tAAACCCGCTCCTCCAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGACCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGa                                                               >  1:47197/1‑136 (MQ=255)                                                                                                  aaaCCCGCTCCTACAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCGGTAGGAGC‑GGGTGGGCCAGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGAc                                                              <  2:47197/136‑1 (MQ=255)                                                                                                      ccGCTCCTACAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTcc                                              >  7:150182/1‑148 (MQ=255)                                                                                                                aa‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑GGGTTTACACGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGc                                            >  6:109277/1‑140 (MQ=255)                                                                                                                 a‑gtagtGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCa                                           <  5:109277/140‑1 (MQ=255)                                                                                                                         cACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACATACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTca                            >  8:8209/1‑148 (MQ=255)                                                                                                                          aCCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTcac                           >  5:117528/1‑148 (MQ=255)                                                                                                                                       ggggtggtgACCGTTTAGGTGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGc              <  1:67896/145‑1 (MQ=39)                                                                                                                                       gCTGTGGGGAACCTGTCGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGc              <  8:178198/148‑1 (MQ=255)                                                                                                                                            ggtgAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGaaa          <  8:127369/147‑1 (MQ=255)                                                                                                                                              tgAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAAc        <  8:95376/147‑1 (MQ=255)                                                                                                                                                 aCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGa     <  3:89897/147‑1 (MQ=255)                                                                                                                                                 aCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGa     <  8:135534/147‑1 (MQ=255)                                                                                                                                                  ccTGTCGCAGC‑GGTTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAAt   <  6:127695/148‑1 (MQ=255)                                                                                                                                                   cTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATc  >  5:37902/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAA‑GTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATC  >  NC_002947/6000821‑6001113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.