New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6130933 =	39 (1.090)	5 (0.150)	5/276	3.8	11.8%	coding (589/1080 nt)	copB‑II	copper resistance protein B
	?	NC_002947	6130954 =	38 (1.120)					coding (568/1080 nt)	copB‑II	copper resistance protein B
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGCTCCCCATGTCTGAGGAGATCCTGGTTGGAAGTCTTGGCGCACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTGTCATGCATCTGATGCCCGCCCAACGGA  >  NC_002947/6130807‑6131099                                                                                                                                                    |                                                                                                                                                  aaGCTCCCCATGTCTGAGGAGATCCTGGTTGGAAGTCTTGGCGCACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGAt                                                                                                                                                   <  1:39828/148‑1 (MQ=255)        ccATGTCTGAGGAGATCCTGGTTGGAAGTCTTGGCGCACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGc                                                                                                                                            >  8:111535/1‑148 (MQ=255)                  ggagATCCTTGTTGGAAGTCTTGGCGCAACCCAGCGACCACATCCCAACATGTGCTAATTGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGATCAACTTCTGATCGGATCCACAGCCGGTTGata                                                                                                                                   <  4:133966/147‑1 (MQ=255)                                 aaGTCTTGGCGCACCCCAGCGACCACATCCCACCATGGGCTAATGTAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATc                                                                                                                   <  7:139419/148‑1 (MQ=255)                                 aaGTCTTGGCGCACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATc                                                                                                                   <  8:74732/148‑1 (MQ=255)                                  aGTCTTGGCGCACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCAt                                                                                                                    >  2:4039/1‑146 (MQ=255)                                   gTCTTGGTGCACCCCAGCGACCACATCCCAGCATGGGCTAATGGAACGCCCATACAGAAGATGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCa                                                                                                                 <  8:76725/148‑1 (MQ=255)                                      ttGGCGCACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGaa                                                                                                              <  3:102912/148‑1 (MQ=255)                                      ttGGCGCACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGaa                                                                                                              >  1:16524/1‑148 (MQ=255)                                         gcgcACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGaa                                                                                                              <  2:204245/145‑1 (MQ=255)                                           gcACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCtgc                                                                                                         <  1:138948/148‑3 (MQ=255)                                           gcACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTc                                                                                                         <  7:172205/148‑1 (MQ=255)                                               cccAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCaa                                                                                                     >  1:67518/1‑148 (MQ=255)                                               cccAGCGACCACATCCAACCATGGGCTAATGGAAGGCCCATAAAGAATCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGATCACCTTCGGAGAGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCaa                                                                                                     <  6:45608/148‑1 (MQ=255)                                                     gACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAgc                                                                                               >  3:66501/1‑148 (MQ=255)                                                        cacaTCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACCGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAgcgcg                                                                                            >  3:105127/1‑148 (MQ=255)                                                            tcgcaccaTGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGc                                                                                        <  1:190476/145‑1 (MQ=255)                                                             cccACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGcc                                                                                       <  4:91104/148‑1 (MQ=255)                                                                accaTGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTc                                                                                    >  3:173053/1‑148 (MQ=255)                                                                  caTGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGt                                                                                  <  2:135846/148‑1 (MQ=255)                                                                   aTGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTc                                                                                 <  6:140699/148‑1 (MQ=255)                                                                    tGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCACCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCt                                                                                <  4:119971/148‑1 (MQ=255)                                                                         tAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATc                                                                           >  8:144644/1‑148 (MQ=255)                                                                                    ccATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCaa                                                                >  7:104306/1‑148 (MQ=255)                                                                                           gtaGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATc                                                         <  7:52612/146‑1 (MQ=255)                                                                                           gAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATc                                                         <  7:111535/148‑1 (MQ=255)                                                                                                     cTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGgaa                                                >  1:78750/1‑147 (MQ=255)                                                                                                       cAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCACGCCAGCGCGCTGCCTTCGTCGGCATCCTGGTACTCAAGCTTATCTAGCAGgaagaa                                             >  7:152993/1‑148 (MQ=255)                                                                                                            tCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGt                                        <  7:31279/148‑1 (MQ=255)                                                                                                               tCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGa                                     >  2:139128/1‑148 (MQ=255)                                                                                                                       gCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTg                             >  7:128849/1‑148 (MQ=255)                                                                                                                       gCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTg                             >  4:53697/1‑148 (MQ=255)                                                                                                                        ccATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTGt                            <  2:78750/148‑1 (MQ=255)                                                                                                                          aTTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTGTCa                          >  2:155030/1‑148 (MQ=255)                                                                                                                                        cTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATcg                                  >  4:49739/1‑126 (MQ=255)                                                                                                                                         ttCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCCACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTGTCATGCATCTGATgcccg           >  6:55987/1‑148 (MQ=255)                                                                                                                                         ttCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATcgc                                 <  3:49739/126‑1 (MQ=255)                                                                                                                                         ttCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTGTCATGCATCTGATgcccg           <  7:160482/148‑1 (MQ=255)                                                                                                                                               gCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTGTCATGCATCTGATGCCCGCCCAAc     <  1:155030/148‑1 (MQ=255)                                                                                                                                                cGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTGTCATGCATCTGATGCCCGCCCAACg    <  4:66501/148‑1 (MQ=255)                                                                                                                                                  gATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTGTCATGCATCTGATGCCCGCCCAACgga  <  4:104910/148‑1 (MQ=255)                                                                                                                                                  gATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTGTCATGCATCTGATGCCCGCCCAACgga  <  8:93239/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  AAGCTCCCCATGTCTGAGGAGATCCTGGTTGGAAGTCTTGGCGCACCCCAGCGACCACATCCCACCATGGGCTAATGGAACGCCCATACAGAAGCTGCAACTCAGCGTCCTCGGTGACGCCATTCGTCCGCTCACCTTCGGAGCGGATCCACAGCCGGTTGATATCGCCGCCAACCCATCCAGAAGCTTCCCAAGCCAGCGCGCTGCCTTCGTCTGCATCCTGGTACTCAAGCTTATCTAGCAGGAAGAAGCTGTTGATCGCGCTGTCATGCATCTGATGCCCGCCCAACGGA  >  NC_002947/6130807‑6131099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.