New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5914157 = | 44 (0.790) | 6 (0.140) | 6/220 | 5.7 | 16.4% | intergenic (+49/+104) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
? | NC_002947 | 5914253 = | 26 (0.590) | intergenic (+145/+8) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
ATCGACATCTTCGTCGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG > NC_002947/5914013‑5914303 | aTCGACATCTTCGTCGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGccc < 4:313481/149‑1 (MQ=255) cGACATCTTCGTCGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCctc > 5:202929/1‑149 (MQ=255) gcgTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACg < 7:46683/148‑1 (MQ=255) gTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGccc < 1:291086/149‑1 (MQ=255) aGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTcc < 4:32892/149‑1 (MQ=255) ggAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTccc < 5:305935/149‑1 (MQ=255) aaGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCg > 1:320432/1‑147 (MQ=255) aaGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCa < 6:33969/149‑1 (MQ=255) gCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCTCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAgg < 1:227174/149‑1 (MQ=255) cGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAggg < 2:320432/149‑1 (MQ=255) cGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGACCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCACAgg > 7:42882/1‑148 (MQ=255) aaGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑Tc > 7:326671/1‑148 (MQ=255) ttCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAgg > 2:124193/1‑148 (MQ=255) ttCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACCCCCGCTCCCCCAGGGTAATT‑‑TCGAAGGc > 6:113311/1‑149 (MQ=255) tCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCt > 3:130432/1‑149 (MQ=255) cACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGc < 6:202929/149‑1 (MQ=255) aCTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGcc > 7:95100/1‑149 (MQ=255) tCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCtg > 6:131422/1‑149 (MQ=255) gATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACCCCCGCTCCCCCAGGGTAATT‑‑TAGAAAGCTGAAggcctg > 4:203721/1‑143 (MQ=255) tcCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCt < 7:267434/142‑1 (MQ=255) tcCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACCCCCGCGCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCAGTGAca > 7:34248/1‑147 (MQ=255) gAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTccc > 6:104005/1‑106 (MQ=255) gAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTccc < 5:104005/106‑1 (MQ=255) gAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTGACTTACCTGTgg < 4:130432/148‑1 (MQ=255) gTACAACTGGTACCTGCATACCGTGTGAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTGACTTACCtgt > 1:4138/1‑145 (MQ=255) gTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTGACTTACCtgt < 2:4138/144‑1 (MQ=255) cAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCgg > 4:294949/1‑149 (MQ=255) cAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCgg < 2:336104/149‑1 (MQ=255) aCTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGc < 5:131422/149‑1 (MQ=255) gTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCACATAGCGGGC‑CCGCCCCCTCCCCCAGGGGTAAT‑‑TCGAAGGGGGGCGGCAGTGGCGTACCAGTTGGGGCGGGCGTga > 5:219849/1‑148 (MQ=255) ccTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGccc < 3:294949/148‑1 (MQ=255) cATACCGTGT‑AAACCAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGGGTCGCCCGCTTCGCGGGC‑ACGCCCGCTCCCGCTGGGTAATT‑‑TCTAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCcgcg < 6:319299/147‑1 (MQ=255) atcccGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGGGACTTACCTGTGGGAGCGGGCGTGCCCGCGAag < 3:203721/146‑1 (MQ=255) cGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑CCGCCCCCGCCCGGCGGGGAATT‑‑TGGAAGGGTGGAGCCGGGGGCGTACCTGTGGGAGCGGGCGTGGCCGGGCAGCggg > 2:222079/1‑149 (MQ=255) aaaCGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACCCCCGCTGCCGGAGGGTAATT‑‑TCGAAGGCTGAAGCCTGGGAGTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGggcgggc > 1:32509/1‑147 (MQ=39) aaaCAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACCCCCGCACCCCCAGGGGAATT‑‑TAGAAGGCTGAAGCCTGTGAATTAACAGTGGGAGCGGGCCTGCCCGCGAAGAGGGCGGcc > 2:120840/1‑149 (MQ=25) acaaaaaCGCCGCCCTTGAGGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCtgt > 1:312399/4‑105 (MQ=38) acaaaaaCGCCGCCCTTGAGGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCtgt < 2:312399/102‑1 (MQ=38) cTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCt > 3:99886/1‑148 (MQ=255) cgTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGc > 5:167697/1‑75 (MQ=255) cgTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGc < 6:167697/75‑1 (MQ=255) tttttttgTGACGGGTGCCGCCCTC‑TCGCGGGCAACGCCGGGCCCCGCTGTTTATTT‑‑TCTACGGCTGACCCTTGTTACTACGGTGGGGTCGGGGGGGGGCCGGCTAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCg < 2:32509/148‑1 (MQ=255) tCGCCCTTTTGGGGGGA‑AGGCCGGCTCCCGAAGGTTATTT‑‑TCGATGGTTTAAGCGTGTTATTTACTTGTGGTAGGGGGGGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTg < 4:99886/148‑1 (MQ=255) tCGCCCTCTTCGCGGGC‑ACGCCCGCTGCCGCAGGGTAATTCCCCTTCGGCTGAAGCGTGTGACTTACCTGTGGGAGCGGGGGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGtt < 1:124193/149‑1 (MQ=255) | ATCGACATCTTCGTCGCGTGCAAGGAAAGCGAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATACCGTGT‑AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG > NC_002947/5914013‑5914303 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |