New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 65278244 (0.790)10 (0.210) 9/236 4.9 34.7% coding (1961/1962 nt) ctpL methyl‑accepting chemotaxis protein CtpL
?NC_002947 = 4808159 0 (0.000)intergenic (‑268/‑287) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
Rejected: Coverage evenness skew score above cutoff.

GTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCG  >  NC_002947/4808016‑4808198
                                                                                                                                               |                                       
gtgtCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTCTACCCCCGGCGAATTTCAGCGACTCGGAGGTGAACGCAGCTACAGTATCAGAGCCAGGcaga                                     >  1:171951/1‑148 (MQ=255)
   tCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGGCGGGGGATTTTGAGCGCCTGGGAGGTCTTCCGGGGGAGAGATTCAGCGCCTGGGAGTTc                                   >  7:133075/1‑147 (MQ=38)
                          gcgcAAATCGCGCTTTGGCGGGTAGGCCTTGGGCGGCAGGGTGTCAGCGCCTGGGAGGTGTTCGCCGGGCGACTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGgcgcttcgc          <  3:116777/149‑6 (MQ=25)
                                   gcgcTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTACGCCGGGAGAGTTTCAGCGACTCGGAGATAGAGCGACGCCCGCGCGGCGCttcgcgtgtaaac  >  1:131355/1‑141 (MQ=25)
                                                                                                                                               |                                       
GTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCG  >  NC_002947/4808016‑4808198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.