Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,697,896 | Δ1 bp | 6.9% | coding (1929/2289 nt) | PP_1492 → | two‑component system sensor histidine kinase/response regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,697,896 | 0 | G | . | 6.9% | 185.0 / 6.7 | 58 | coding (1929/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator |
Reads supporting (aligned to +/- strand): ref base G (29/25); new base . (2/2); total (31/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.90e-01 |
CTTGCTCGATGATGGCTCGGTGGTCCTGATCGTCGATGTCGAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTCGACCTGTTGATCACCGACATCGACAT > NC_002947/1697749‑1698042 | cTTGCTCGATGATGGCTCGGTGGTCCTGATCGTCGATGTCGAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCtggtgg > 3:192101/1‑149 (MQ=255) gtggtCCTGATCGTCGATGTCGAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCg > 7:209807/1‑148 (MQ=255) gtggtCCTGATCGTCGATGTCGAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCg > 7:24490/1‑148 (MQ=255) gtCCTGATCGTCGATGTCGAAGACTTGCTACGCTCGCGGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGGGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTAcg > 4:165814/1‑149 (MQ=255) ccTGATCGTCGATGTCGAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCATAcgc > 1:106303/1‑148 (MQ=255) cTGATCGTCGATGTCGAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGATGACTCGCTGACCGTAcgcg > 8:87784/1‑148 (MQ=255) tGATCGTCGATGTCGAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGaa > 4:259101/1‑149 (MQ=255) aTGTCGAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAgcg > 3:211711/1‑148 (MQ=255) tGTCGAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAgcgc > 5:183352/1‑148 (MQ=255) gAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAgct > 7:160272/1‑149 (MQ=255) gACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAgctgct > 5:128138/1‑149 (MQ=255) cTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTgg < 6:145838/149‑1 (MQ=255) cTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTgg < 3:181794/149‑1 (MQ=255) gCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCCCATCGCGCGCGGCAGCAGCGGAGCCCTTGGCGTAGTCCGCAACCGCATCCTCGTGGTCGACCACTCGCTGCCCGTACGCGAACTGCAGCTCCAGCTGCTGGGc > 1:49752/1‑148 (MQ=255) tcgctGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTgg > 6:175074/1‑149 (MQ=255) gAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTac < 6:128138/147‑1 (MQ=255) aaaaaCTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTacgac < 2:171442/149‑1 (MQ=255) cTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACgtggc < 8:24490/149‑1 (MQ=255) cTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACgtggc < 8:209807/149‑1 (MQ=255) cTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACgtggcggt < 5:175074/149‑1 (MQ=255) aGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACgtggcggtg < 3:219230/147‑1 (MQ=255) gCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACgtggcggtggcg > 2:118632/1‑149 (MQ=255) cACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGtggtggtggcgg < 8:133030/149‑1 (MQ=255) cACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGtggcggtggcgg < 4:132453/149‑1 (MQ=255) aCGGGCAGCCTGGAGCGCATCGGGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTggcggtggcggt < 3:165814/149‑1 (MQ=255) tGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGCCGACTCGCTGACCGTACGAGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATg > 1:25641/1‑149 (MQ=255) ggAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATg > 3:156040/1‑148 (MQ=255) gcgcATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTacg > 3:57495/1‑119 (MQ=255) gcgcATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTacg < 4:57495/119‑1 (MQ=255) gcgcATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACg > 1:13866/1‑149 (MQ=255) gcgcATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACg > 1:9507/1‑149 (MQ=255) cATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCt > 5:189909/1‑149 (MQ=255) cATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCt < 1:118632/149‑1 (MQ=255) aTCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTg > 2:4841/1‑149 (MQ=255) gcGAGCGCTGCAGCAGCTGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGGGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTgg < 2:49752/148‑1 (MQ=255) gAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGTGGTGGCGGTGGATGGCATGGACGGCTGGaa < 4:192101/149‑1 (MQ=255) gAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGaa > 6:8601/1‑149 (MQ=255) gAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGa < 3:259101/148‑1 (MQ=255) agcagcGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGc < 4:94480/143‑1 (MQ=255) agcagcGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGc > 3:94480/1‑143 (MQ=255) cagcGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCa < 1:4841/149‑1 (MQ=255) agcGGAGCCCGTGGCGTAGTCCGCAAACGCTTACTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAAAGACCTGCGCAg > 5:33094/1‑149 (MQ=255) agcGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATg < 8:192905/126‑1 (MQ=255) agcGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATg > 7:192905/1‑126 (MQ=255) cGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTg < 5:8601/149‑1 (MQ=255) gAGCCCGGGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAg < 6:189909/149‑1 (MQ=255) cccGTGGCGTAGTCCGCAAACGCATCCTGGT‑GTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTggcggtggcggt < 1:6535/108‑1 (MQ=255) cccGTGGCGTAGTCCGCAAACGCATCCTGGT‑GTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTggcggtggcggt > 2:6535/1‑108 (MQ=255) cccGTGGCGTAGTCCGCAAACGCATCCTGGT‑GTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTggcggtggcggt > 2:2255/1‑108 (MQ=255) cccGTGGCGTAGTCCGCAAACGCATCCTGGT‑GTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTggcggtggcggt < 1:2255/108‑1 (MQ=255) aGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGATGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGAGAGGACTTCGACCTGt > 2:91975/1‑149 (MQ=255) gTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTCGACCTGtt < 4:156040/149‑1 (MQ=255) gTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTCGACCTGt < 1:33421/148‑1 (MQ=255) tCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTCGACCTGtt > 7:131648/1‑148 (MQ=255) aaaCGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTCGACCTGTTGATCAc < 8:160272/149‑1 (MQ=255) aaaCGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTCGACCTGTTGATCAc > 4:210546/1‑149 (MQ=255) aaaCGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTCGACCTGTTGATCAc > 4:214154/1‑149 (MQ=255) gCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACTCCCTGCGCAGt < 4:206777/122‑1 (MQ=255) gCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGt > 3:206777/1‑122 (MQ=255) tggtggTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTCGACCTGTTGATCCCcgacatcga > 5:197977/1‑148 (MQ=255) gtggtCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTCGACCTGTTGATCACcgacatcgacat < 4:211711/149‑1 (MQ=255) | CTTGCTCGATGATGGCTCGGTGGTCCTGATCGTCGATGTCGAAGACTTGCTACGCTCGCTGGAAAAACTGCTCAGCACGGGCAGCCTGGAGCGCATCGAGCGCGGCAGCAGCGGAGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTCGACCTGTTGATCACCGACATCGACAT > NC_002947/1697749‑1698042 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |