| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,177,526 | Δ1 bp | 11.1% | coding (237/384 nt) | PP_2788 ← | MerR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,177,526 | 0 | G | . | 11.1% | 105.7 / 8.1 | 36 | coding (237/384 nt) | PP_2788 | MerR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (15/17); new base . (2/2); total (17/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTGCTGGCTGTAGATGCGGTACTTGCCT > NC_002947/3177381‑3177667 | aGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGc < 8:77237/148‑1 (MQ=255) tttttCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATcc > 8:54081/1‑148 (MQ=255) tttttCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATcc > 2:52482/1‑148 (MQ=255) ttCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTcc < 8:38773/148‑1 (MQ=255) gCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCgat > 7:96442/1‑149 (MQ=255) gCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATc < 7:73550/148‑1 (MQ=255) cATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGGCCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATc < 1:52482/148‑1 (MQ=255) aTCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCAT‑GCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTg > 4:102237/1‑148 (MQ=255) aTCTGAGAATCCTAGAGGCTCAGCTCAAACTAAACCAAGCAGTAATGCACATGCTGCAAGGCCTGGATCTGCCCCAACAATTACTGCTTTATGTTATCGATGG‑CCTCCAT‑TAAAGATCACAGGGCAGCTCCTGGCCGCGATCATCCTg > 8:8703/1‑148 (MQ=255) aaGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCa < 6:203896/146‑1 (MQ=255) aaGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCa > 5:203896/2‑147 (MQ=255) aGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCa < 8:206726/146‑1 (MQ=255) cTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGcc < 8:96442/148‑1 (MQ=255) gctcagctcaAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCAttt < 7:54081/149‑1 (MQ=255) agctcaAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCga > 3:121048/1‑120 (MQ=255) agctcaAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCga < 4:121048/120‑1 (MQ=255) agctcaAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCtt > 7:106427/1‑149 (MQ=255) tcaAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAg > 5:104554/1‑149 (MQ=255) aaCTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCtt < 6:265379/149‑1 (MQ=255) aaCCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAAc > 4:67838/1‑149 (MQ=255) gCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGtt > 7:127059/1‑149 (MQ=255) ccGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTg < 8:127059/149‑1 (MQ=255) aTGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCAT‑GCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAg < 3:102237/148‑1 (MQ=255) gCACTTGCTTCAAGGCCTTGATCTGCCCGATCAATTCGTGCTTTTTGTTATCTATGG‑CCTGCAT‑GCCAGATCCCAGGGCATCTCCTGGCCGCGATGATCCTTCAGTATGGCCTGCATTTGCTTGAGCTTGAAACCGAGTTGCTGAg < 7:8703/146‑1 (MQ=255) gctgcAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCAttt < 6:104554/148‑1 (MQ=255) ggCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGa > 1:119593/1‑133 (MQ=255) ggCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGa < 2:119593/133‑1 (MQ=255) aTTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTgc > 5:122682/1‑149 (MQ=255) tCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTg < 2:265693/146‑1 (MQ=255) tCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTg > 1:265693/1‑146 (MQ=255) cTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTgctgg < 8:106427/148‑1 (MQ=255) gTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTGCTGGCTGTAGATGc > 4:26550/1‑149 (MQ=255) ttATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTGCTGGCTGTAGATGc < 6:122682/148‑1 (MQ=255) aTCGAGGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTGCTGGCTGTAGATGCgg > 7:243460/1‑148 (MQ=255) gATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTGCTGGCTGTAGATGCGGTACt < 3:26550/149‑1 (MQ=255) ccTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTGCTGGCTGTAGATGCGGTACTTGCCt > 8:251994/1‑149 (MQ=255) | AGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTGCTTTTTGTTATCGATGG‑CCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCTGCATTTCCTTGAGCTTGAAACCGAGTTGCTGAGCGCATTTGATGAAGGTCAGCAGCTCTACGCTTTGCTGGCTGTAGATGCGGTACTTGCCT > NC_002947/3177381‑3177667 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |