Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,235,252 | Δ1 bp | 9.8% | coding (347/1542 nt) | PP_2834 → | D‑galactarate dehydratase/altronate dehydratase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,235,252 | 0 | T | . | 9.8% | 123.4 / 7.9 | 41 | coding (347/1542 nt) | PP_2834 | D‑galactarate dehydratase/altronate dehydratase |
Reads supporting (aligned to +/- strand): ref base T (18/19); new base . (2/2); total (20/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01 |
ATCGGATTTGCGTCCCAGGCGATCGACGCTGGCGACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACATTCACCCCGAGGTGCTGGCCGACTACCCG > NC_002947/3235110‑3235388 | ctcGGATTTGCGTCCCAGGCGATCGACGCTGGCGACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTgcgcgc < 8:121115/148‑1 (MQ=255) atcGGATTTGCGTCCCAGGCGATCGACGCTGGCGACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTgcgcgc > 3:62360/1‑149 (MQ=255) ggATTTGCGTCCCAGGCGATCGACGCTGGCGACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGa < 6:259897/149‑1 (MQ=255) gCGTCCCAGGCGATCGACGCTGGCGACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGcc < 4:211514/148‑1 (MQ=255) ccAGGCGATCGACGCTGGCGACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGCCATCG‑GCGCGCACGATGccctgg < 4:195535/146‑4 (MQ=255) ccAGGCGATCGACGCTGGCGACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGCCATCG‑GCGCGCACGATGccctgg > 3:195535/1‑143 (MQ=255) ggCGATCGTCGCTGGCGACCTTGTGGATGTGCAAAAAGTGCAGTTGGGCTATTTTGCGCGCGAGTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCGGTGTCGGCa < 2:96582/149‑1 (MQ=255) gATCGACGCTGGCGACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCAccc < 3:260248/149‑1 (MQ=255) gCTGGCGACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTa > 5:11556/1‑149 (MQ=255) gACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCgg < 4:62360/149‑1 (MQ=255) catgtgcatgtgCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCG‑GCGCGCACGATgc < 8:54117/119‑2 (MQ=255) catgtgcatgtgCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCG‑GCGCGCACGATgc > 7:54117/1‑118 (MQ=255) tgtgcatgtgcaCAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGTCCGTGTCCCAAACATCAA‑‑ATACATctcaatt > 6:187953/1‑142 (MQ=255) tgcatgtgcaCAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATt‑ct‑‑c < 6:11556/149‑1 (MQ=255) cacaACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATGGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGt < 5:152563/149‑1 (MQ=255) acaACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCAAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTg < 5:187953/149‑1 (MQ=255) aGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCg < 7:177936/149‑1 (MQ=255) ccGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCggg > 2:83917/1‑149 (MQ=255) gTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGAc > 4:237145/1‑148 (MQ=255) gtCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTccg > 1:172382/1‑149 (MQ=255) gATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCg < 4:183929/136‑1 (MQ=255) gATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCg > 3:183929/1‑136 (MQ=255) tACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTg < 3:237145/149‑1 (MQ=255) cggcGCTGCCTGGCAGGCTGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGa > 2:241821/4‑149 (MQ=255) cccGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGACCGGGCCGTGGCCGACCATTTCCGCCGTGa > 3:31810/1‑148 (MQ=255) ccGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGAcc > 5:112119/1‑134 (MQ=255) ccGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGAcc < 6:112119/134‑1 (MQ=255) ccGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACa > 1:26173/1‑149 (MQ=255) cGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACAt > 8:172530/1‑149 (MQ=255) cTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACATTCAccc > 5:94598/1‑149 (MQ=255) gCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACATTCAcccc > 2:256763/1‑148 (MQ=255) ccAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACATTCAcccc > 3:180595/1‑147 (MQ=255) ccAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACATTCACCCCGa < 2:172382/149‑1 (MQ=255) gCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGc < 4:197336/94‑1 (MQ=255) gCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGc > 3:197336/1‑94 (MQ=255) gCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACATTCACCCCGAGGTg < 4:180595/149‑1 (MQ=255) aGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAACTCTACATCGGCATTCCTCCCTCCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACATTCACCCCGAg < 1:83917/149‑1 (MQ=255) cgccgcGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGt < 3:230146/127‑1 (MQ=255) cgccgcGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGt > 4:230146/1‑127 (MQ=255) cgcAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACATTCACCCCGAGGTGCTGGCCGAc < 1:256763/149‑1 (MQ=255) ccAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACATTCACCCCGAGGTGCTGGCCGACTACCCg > 1:97573/1‑148 (MQ=255) | ATCGGATTTGCGTCCCAGGCGATCGACGCTGGCGACCATGTGCATGTGCACAACGTGCAGATGGGCGATTTTGCCCGCGACTATGCGTTTGGTGTCGATACCCGCAGCCTGCCAGGCAGCGCCGCGCAGTTCCAGGGCATCGTGCGCGC‑CGATGGCCGTGTCGCCACCCGCAA‑‑CTACATCGGCATT‑CT‑‑CACCTCGGTGAACTGTTCGGCGACCGTGGCCCGGGCCGTGGCCGACCATTTCCGCCGTGACATTCACCCCGAGGTGCTGGCCGACTACCCG > NC_002947/3235110‑3235388 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |