| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 568,257:1 | +G | 8.0% | coding (1239/2835 nt) | uvrA ← | uvrABC excinuclease protein A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 568,257 | 1 | . | G | 8.0% | 186.4 / 11.6 | 50 | coding (1239/2835 nt) | uvrA | uvrABC excinuclease protein A |
| Reads supporting (aligned to +/- strand): ref base . (25/21); new base G (2/2); total (27/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01 | |||||||||||
TCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTGCGATCGCTTGACGATGTCGC > NC_002947/568114‑568405 | tCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGgc < 4:102592/148‑1 (MQ=255) cTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGgcgc < 2:76349/148‑1 (MQ=255) gAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGt < 2:251680/147‑1 (MQ=255) aGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCT‑GCGCCGCGAGGcgcgcca < 4:244322/148‑4 (MQ=255) tttttGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCgg > 1:125865/1‑149 (MQ=255) ttttGCCGCGATTTCGCCACGCCTGCCAGTAAGGTTCAGTTGACCAATGTAGTTGCTGGCTTCACGGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCTCCTCGCGGCGC‑AGGCGCGTACCCAgg < 4:134569/148‑1 (MQ=255) tttCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCAc > 5:163150/1‑149 (MQ=255) cGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGgcg < 6:157548/124‑1 (MQ=255) cGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGgcg > 5:157548/1‑124 (MQ=255) gCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGc < 1:97400/134‑1 (MQ=255) gCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGc > 2:97400/1‑134 (MQ=255) ccACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGTGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTg > 7:120355/1‑149 (MQ=255) gCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGTGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCaa < 8:120355/149‑1 (MQ=255) aGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAga > 1:95990/1‑147 (MQ=255) aGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGT‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAg < 1:206540/149‑1 (MQ=255) aGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGTCCAg > 6:256106/1‑149 (MQ=255) aCCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGttct > 4:99332/1‑148 (MQ=255) ccAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGttctt > 3:194427/1‑148 (MQ=255) cAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTca > 8:37595/1‑149 (MQ=255) cAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTca < 2:28351/149‑1 (MQ=255) aaaGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTcac > 1:36470/1‑149 (MQ=255) gtagtTGCTGGCTTCACCGATCGGCAAATTGGGTACCGCCGGCAGGGTTTTCTCGCCCACCCACAGATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTcacgca < 1:177786/149‑1 (MQ=255) aCCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGc > 1:33579/1‑107 (MQ=255) aCCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGc < 2:33579/107‑1 (MQ=255) aCCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCgg > 3:121712/1‑149 (MQ=255) aCCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGGGGCCGATTCgg > 8:208831/1‑149 (MQ=255) gCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCgg > 4:144269/1‑149 (MQ=255) gCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCgg > 6:183523/1‑149 (MQ=255) cAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCgg > 6:12141/1‑148 (MQ=255) gTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAgcggcg < 5:12141/149‑1 (MQ=255) ttACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGgcgc < 1:72680/149‑1 (MQ=255) cgccgGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCaa < 4:194427/149‑1 (MQ=255) cgGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGt < 7:37595/149‑1 (MQ=255) ggTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGca > 5:252406/1‑149 (MQ=255) cccacccaCACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTc > 4:24436/1‑149 (MQ=255) cccacccaCACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTc < 1:72658/149‑1 (MQ=255) cccacccaCACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCAAGCACGTTGGCCGATTCGGTTTCGCTGTCTCGGCGCTCAAGCTACGGCACACTGCCTTc > 8:114303/1‑149 (MQ=255) ccacACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACg > 2:115421/1‑149 (MQ=255) cacacaTGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACgg < 3:144269/149‑1 (MQ=255) acacaTGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCTCGGTGGCCGATTCGGTTTCGCGGTAGCGGAGCTCAAGGTTCGGCACAATGCCTTCGAACggg > 6:188890/1‑149 (MQ=255) acacaTGGCGCGCCTCGCGGCGC‑AGGAGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACggg > 1:11399/1‑149 (MQ=255) cacaTGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGt < 3:99332/149‑1 (MQ=255) acaTGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTg < 2:36470/149‑1 (MQ=255) gggtacgcgcCT‑GCGCCGCGAGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGAGTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTGc > 7:147705/6‑149 (MQ=255) ggtacgcgcCT‑GCGCCGCGAGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAAc < 7:125732/138‑1 (MQ=255) ggtacgcgcCT‑GCGCCGCGAGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAAc > 8:125732/5‑142 (MQ=255) aTGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTGc > 1:169521/1‑148 (MQ=255) ccTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTGCGATCGCTTg < 5:256106/149‑1 (MQ=255) cTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTGCGATCGCTTGa < 6:163150/149‑1 (MQ=255) ggcgC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTGCGATCGCTTGACGATg > 2:192383/1‑149 (MQ=255) gc‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTGCGATCGCTTGACGATGTCg > 4:58019/1‑149 (MQ=255) gc‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTGCGATCGCTTGACGATGTCg > 8:126718/1‑149 (MQ=255) c‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTGCGATCGCTTGACGATGTCGc > 2:265250/1‑149 (MQ=255) | TCCTTGAGGATTTTTGCCGCGATTTCGCCACGCCGGCCAGTAAGGGTCAGTTGACCAAAGTAGTTGCTGGCTTCACCGATCGGCAAATTGGTTACCGCCGGCAGGGTTTTCTCGCCCACCCACACATGGCGCGCCTCGCGGCGC‑AGGCGCGTACCCCGGCAATCCGGGCACGGTTGCGTGCCAAGGAATTTGGCCAGTTCTTCACGCACGGTGGCCGATTCGGTTTCGCGGTAGCGGCGCTCAAGGTTCGGCACAATGCCTTCGAACGGGTGCGATCGCTTGACGATGTCGC > NC_002947/568114‑568405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |