Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,491,142:1 | +A | 7.8% | coding (805/1902 nt) | cysNC → | sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,491,142 | 1 | . | A | 7.8% | 194.2 / 11.5 | 51 | coding (805/1902 nt) | cysNC | sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase |
Reads supporting (aligned to +/- strand): ref base . (21/26); new base A (2/2); total (23/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 |
GTACGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATCGACATC > NC_002947/1490997‑1491285 | gTACGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tg < 2:128544/148‑1 (MQ=255) aCGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tggtg > 3:205370/1‑149 (MQ=255) cGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGc < 1:144449/149‑1 (MQ=255) cGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCA‑CGCCACTGGCGATGGTGc < 2:113410/149‑1 (MQ=255) gCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGca > 5:100881/1‑149 (MQ=255) gACGCTGATGGAAATCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGt > 7:104948/1‑148 (MQ=255) gCTGATGGAAATCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGAc > 7:83498/1‑148 (MQ=255) tGGAAATCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGAtt < 2:72338/149‑1 (MQ=255) tCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGtg < 8:104948/149‑1 (MQ=255) ccGAAACC‑TCGACGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGtgctg > 4:242155/2‑149 (MQ=255) ccGAAACC‑TCGACGGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGATGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGtgctg > 5:225308/2‑149 (MQ=255) cGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tg > 5:159844/1‑118 (MQ=255) cGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCg‑tg < 6:159844/118‑1 (MQ=255) ccGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCg < 5:119749/149‑1 (MQ=255) tCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCgg < 5:155611/147‑1 (MQ=255) tCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCgg > 6:155611/1‑147 (MQ=255) acggTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCaa < 3:242155/147‑1 (MQ=255) ggTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAaga < 3:184281/149‑1 (MQ=255) gCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCg < 4:205370/149‑1 (MQ=255) cTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCgg < 6:269864/149‑1 (MQ=255) tGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCggg > 7:35026/1‑149 (MQ=255) cGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCaa < 2:121508/149‑1 (MQ=255) cAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGt < 6:100881/149‑1 (MQ=255) aaCTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTc > 2:62976/1‑149 (MQ=255) tCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATc > 5:260711/1‑149 (MQ=255) tCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCAGTCGGGCAAGAGCAGCCGGGTCAAGTCCATc > 2:193205/1‑149 (MQ=255) ccGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTc < 1:107144/149‑1 (MQ=255) ccGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTc < 4:142017/149‑1 (MQ=255) cGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCa < 3:68104/149‑1 (MQ=255) cGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCa < 8:35026/149‑1 (MQ=255) gACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCAc > 1:59584/1‑149 (MQ=255) tGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCgg > 8:164556/1‑114 (MQ=255) cGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCTGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGaa < 1:62976/149‑1 (MQ=255) aGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGa > 7:37835/1‑148 (MQ=255) gTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGTACTGGaa > 6:137538/1‑148 (MQ=255) aaCCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTgg > 4:86337/1‑149 (MQ=255) aaCCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTgg < 1:193205/149‑1 (MQ=255) aaCCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTg < 8:83498/148‑1 (MQ=255) tCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCccag < 2:59584/149‑1 (MQ=255) cAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCccaggc > 2:7492/1‑148 (MQ=255) cTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTTCGTAGGTGacga < 3:128695/125‑4 (MQ=255) cTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTTCGTAGGTGacga > 4:128695/1‑122 (MQ=255) aaCTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGt < 1:108088/149‑1 (MQ=255) aaCTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTCGAAAACGCTGGCCCAGGCCAGGCCGt < 1:7492/149‑1 (MQ=255) cTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGGCAAGTCCAGCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCCGGCCCGGCCGTgc > 4:190179/1‑148 (MQ=255) ggCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGAc < 5:137538/149‑1 (MQ=255) gggCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATgg > 2:49340/1‑146 (MQ=255) gCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGAc < 2:162108/149‑1 (MQ=255) accacGCCACTGGCGATGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCccaggccagg > 7:156606/5‑124 (MQ=255) accacGCCACTGGCGATGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCccaggccagg < 8:156606/120‑1 (MQ=255) accacGCCACTGGCGATGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGAc > 8:228761/5‑147 (MQ=255) cATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGAc > 5:22418/1‑145 (MQ=255) tCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATc < 6:225308/149‑1 (MQ=255) ccAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATCGAc < 6:260711/149‑1 (MQ=255) gTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATCGACAtc > 7:142253/1‑149 (MQ=255) | GTACGCCGGCCCGACGCTGATGGAAATCCTCGAAACCGTCGA‑GGTTTCGGCTGACCGCAACTTCACCGACCTGCGTTTCCCGGTGCAGTACGTCAACCGTCCCAACCTGAACTTCCGCGGCTTCGCGGGCACCATCGCCAGTGGCG‑TGGTGCACAAAGGTGACGAGATTGTCGTGCTGCCGTCGGGCAAGAGCAGCCGGGTCAAGTCCATCGTCACCTACGAAGGTGAACTGGAAAACGCTGGCCCAGGCCAGGCCGTGACCCTGACCATGGAAGACGAGATCGACATC > NC_002947/1490997‑1491285 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |