| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2274147 | 32 (0.760) | 6 (0.150) | 5/246 | NT | 15.3% | coding (220/1041 nt) | PP_2004 | AraC family transcriptional regulator |
| ? | NC_002947 | = 2274179 | 36 (0.890) | coding (188/1041 nt) | PP_2004 | AraC family transcriptional regulator | |||||
TCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2273996‑2274147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcagCCATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTATGGGGCGCCTCAGCCGGCTGGCGCATACGGGCCTGGCCGGGGTCACTGCGGCCCAGGCCCCCACCCTGGGCGAGGCCGCGCGTACCCTGCTGCGTTTCGAGCCG < NC_002947/2274179‑2274037 TCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACG > 7:3465/1‑149 TCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAG > 3:178280/1‑149 TTGGTCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGCCATCGAAATGAGCGGTGAGGCCG > 7:225327/1‑149 GGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGCCATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTA < 8:225327/149‑1 CTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATAC > 3:103324/1‑104 CTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATAC < 4:103324/104‑1 GAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGCCATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTATGGG < 1:126727/148‑1 GAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGCCATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTATGGG < 6:47364/148‑1 CTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGCCATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTATG < 3:4985/122‑1 CTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACCCAGCCAAAGAAATGAGCGGTTAGGCCGCTTTAGGTCTGCGTATG > 4:4985/1‑122 ACGCAGCCATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTATGGGGCGCCTCAGCCGGCTGGCGCATACGGGCCTGGCCGGGGTCACTGCGGCCCAGGCCCCCACCCTGGGCGAGGCCGCGCGTACCCTGCTGCGTTTCGAGCCG > 7:26504/1‑149 TCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2273996‑2274147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcagCCATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTATGGGGCGCCTCAGCCGGCTGGCGCATACGGGCCTGGCCGGGGTCACTGCGGCCCAGGCCCCCACCCTGGGCGAGGCCGCGCGTACCCTGCTGCGTTTCGAGCCG < NC_002947/2274179‑2274037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |