New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3816294 =	26 (0.620)	3 (0.080)	3/242	NT	9.9%	coding (527/702 nt)	cpxR	two‑component system regulator CpxR
	?	NC_002947	3816346 =	30 (0.760)					coding (475/702 nt)	cpxR	two‑component system regulator CpxR

GGTGAAACCAGCGCGCCCGAGGTACCTGAACAGGTACGCAGTGGCGCATTGAAAATGTGGCCGGGGCGGCGCGAGGCGCGCTGGGGCGCAGCCACGCTGGAATTGACCGGCTCCGAGTTCAGCCTGCTCGAAGCCCTGGCGCGCCAGGCCGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3816448‑3816294 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtcaATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGC  >  NC_002947/3816346‑3816434                                                                                                                                                                                                                                                      GGTGAAACCAGCGCGCCCGAGGTACCTGAACAGGTACGCAGTGGCGCATTGAAAATGTGGCCGGGGCGGCGCGAGGCGCGCTGGGGCGCAGCCACGCTGGAATTGACCGGCTCCGAGTTCAGCCTGCTCGAAGCCCTGGCGCGCCAGGC                                                                                                 >  5:175486/1‑149  GTGAAACCAGCGCGCCCGAGGTACCTGAACAGGTACGCAGTGGCGCATTGAAAATGTGGCCGGGGCGGCGCGAGGCGCGCTGGGGCGCAGCCACGCTGGAATTGACCGGCTCCGAGTTCAGCCTGCTCGAAGCCCTGGCGCGCCAGGCC                                                                                                >  4:240124/1‑149  GTGAAACCAGCGCGCCCGAGGTACCTGAACAGGTACGCAGTGGCGCATTGAAAATGTGGCCGGGGCGGCGCGAGGCGCGCTGGGGCGCAGCCACGCTGGAATTGACCGGCTCCGAGTTCAGCCTGCTCGAAGCCCTGGCGCGCCAGGCC                                                                                                >  8:219896/1‑149   TGAAACCAGCGCGCCCGAGGTACCTGAACAGGTACGCAGTGGCGCATTGAAAATGTGGCCGGGGCGGCGCGAGGCGCGCTGGGGCGCAGCCACGCTGGAATTGACCGGCTCCGAGTTCAGCCTGCTCGAAGCCCTGGCGCGCCAGGCCG                                                                                               <  1:65484/149‑1                                                                                                GCTGGAATTGACCGGCTCCGAGTTCAGCCTGCTCGAAGCCCTGGCGCGCCAGGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGC  >  7:134059/1‑149                                                                                                       TTGACCGGCTCCGAGTTCAGCCTGCTCGAAGCCCTGGCGCGCCAGGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGG   <  1:103769/141‑1                                                                                                       TTGACCGGCTCCGAGTTCAGCCTGCTCGAAGCCCTGGCGCGCCAGGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGG   >  2:103769/1‑141                                                                                                                                                                                                                                                      GGTGAAACCAGCGCGCCCGAGGTACCTGAACAGGTACGCAGTGGCGCATTGAAAATGTGGCCGGGGCGGCGCGAGGCGCGCTGGGGCGCAGCCACGCTGGAATTGACCGGCTCCGAGTTCAGCCTGCTCGAAGCCCTGGCGCGCCAGGCCGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3816448‑3816294 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtcaATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGC  >  NC_002947/3816346‑3816434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.