| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4002814 | 53 (1.260) | 3 (0.080) | 3/242 | NT | 5.6% | coding (72/600 nt) | PP_3531 | hypothetical protein |
| ? | NC_002947 | = 4002854 | 52 (1.310) | coding (112/600 nt) | PP_3531 | hypothetical protein | |||||
GCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4002660‑4002814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcctgCGCTGCTCACGTAAACGCGAATGCCTTCGCGGTCGTAGGCCAGGCGCCAGTCATCGGCGGCCAGGGCAGAGGTGCACAGCAGCAAGGCAGCGAGCAGCAGGCAGCGGTTCATGGCCGGTACCCTGCAAGGGTGGGTATTTCAGTATG < NC_002947/4002854‑4002708 GCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGG > 3:63771/1‑149 TGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGCACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCG > 6:211214/1‑149 ATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCC > 3:160003/1‑149 TTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTGCGCTGCTCACGTAAACGCGAATGCCTTCGCGGT > 6:195470/1‑149 TGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCGTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTGCGCTGCTCACGTAAACGCGAATGCCTTCGCGGTCGTAGGCCAGGCGC < 4:160003/149‑1 CCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTGCGCTGCTCACGTAAACGCGAATGCCTTCGCGGTCGTAGGCCAGGCGCCAGTCATCGGCG < 5:195470/149‑1 GCGCCTGCGCTGCTCACGTAAACGCGAATGCCTTCGCGGTCGTAGGCCAGGCGCCAGTCATCGGCGGCCAGGGCAGAGGTGCACAGCAGCAAGGCAGCGAGCAGCAGGCAGCGGTTCATGGCCGGTACCCTGCAAGGGTGGGTATTTC < 8:246098/148‑1 TGCGCTGCTCACGTAAACGCGAATGCCTACGCGGTCGTAGGCCAGGCGCCAGTCATCGGCGGCCAGGGCAGAGGTGCACAGCAGCAAGGCAGCGAGCAGCAGGCAGCGGTTCATGGCCGGTACCCTGCAAGGGTGGGTATTTCAGTATG > 7:202147/1‑149 GCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4002660‑4002814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcctgCGCTGCTCACGTAAACGCGAATGCCTTCGCGGTCGTAGGCCAGGCGCCAGTCATCGGCGGCCAGGGCAGAGGTGCACAGCAGCAAGGCAGCGAGCAGCAGGCAGCGGTTCATGGCCGGTACCCTGCAAGGGTGGGTATTTCAGTATG < NC_002947/4002854‑4002708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |